New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1826656 | 13 (0.700) | 3 (0.180) | 3/120 | 1.6 | 13.1% | coding (268/969 nt) | astE | succinylglutamate desuccinylase |
? | NC_000913 | = 1826936 | 28 (1.660) | coding (1324/1344 nt) | astB | succinylarginine dihydrolase | |||||
Rejected: Frequency below/above cutoff threshold. |
GCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGC > NC_000913/1826593‑1826721 | gCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCagga < 1:509817/68‑1 (MQ=255) cAAACATTCGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCgagggagggggctatg > 1:529811‑M1/1‑52 (MQ=255) aaaCATTCGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGa < 1:122750/68‑1 (MQ=255) aaaCATTCGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGa < 2:82234/68‑1 (MQ=255) aCATTCGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATc < 1:332296/68‑1 (MQ=255) tCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCa > 1:465405/1‑68 (MQ=255) cTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACg < 2:625787/68‑1 (MQ=255) cAATAACGTTTCCCTTGCTTCAGCGCgagggagggggcaatggataattttcttgctctgaccttaac > 2:406696‑M1/1‑26 (MQ=255) cAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCGCCAGCAACCGCCAACGTAACgg > 1:204145/1‑68 (MQ=255) aaCGTTTCCCTTGCTTCAGCGCgagggagggggcaatggataattttcttgctctgaccttaacgggt < 1:406698‑M1/68‑47 (MQ=255) cGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGAtctc > 1:310843/1‑68 (MQ=255) gTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGAATCACAAGCAACAGCCAACGTAACGGGAACTCg > 2:63721/1‑68 (MQ=255) ttCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGcc < 1:433949/68‑1 (MQ=255) cccTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGt < 2:576784/68‑1 (MQ=255) gCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGat < 2:465403/68‑1 (MQ=255) cgcAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCgcgc > 1:406823/1‑68 (MQ=255) | GCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGC > NC_000913/1826593‑1826721 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |