| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 805949 = | 40 (2.150) | 3 (0.230) +AAAACAACTAAAATTCAATA |
3/92 | 1.2 | 9.8% | noncoding (146/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 3625674 | NA (NA) | intergenic (+160/+5) | yhhI/yhhJ | putative transposase/putative ABC transporter permease | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCC > NC_000913/3625624‑3625741 | cAATAAATTGCACCGATTCGTAGTCCCTATAAGCTTACGCATCGG‑TCAATTGTATTTACGCCATTGTc < 1:512068/68‑1 (MQ=255) tcaCCGATGCGTAGTCCCTATAAGCTTACGCATCGGTGCAATTtattgaattttagttgtttttaggc > 2:490262‑M2/2‑43 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCTATCGTcgt > 1:352411/1‑66 (MQ=255) ccGATGCGTAGTCCCTATAAGCTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATAGACTTc > 2:589105/1‑68 (MQ=255) gCGTAGTCCCTATAAGCTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:20649/68‑1 (MQ=255) aGTCCCTATAAGCTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgc > 2:635251/1‑68 (MQ=255) gtaccTATAAGCTTACGCATCGG‑GCTATTGTATTTAAGACATTGTCAAAATCGTCTTCCTGCATCgca > 1:666663/4‑68 (MQ=255) tCCCTATACGCTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:644157/1‑68 (MQ=255) cTATAAGCTTACGCATCGGTGCAATTtattgaattttagttgtttttaggccggataaggcgtt < 1:174934‑M2/64‑39 (MQ=255) cTATAAGCTTACGCATCGGTGCAATTtattgaattttagttgtttttaggccggataaggcgtt > 2:174934‑M2/1‑26 (MQ=255) cataAGCCTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 2:579476/67‑1 (MQ=255) aGCTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:128526/1‑68 (MQ=255) cTTACGCATCGG‑GCTATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCCGCAGCGCAATg > 2:379370/1‑68 (MQ=255) cTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 2:674881/1‑68 (MQ=255) ttACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCATTCGTCTTCCTGAATCGCAGCAGCGCAATgg < 2:604023/68‑1 (MQ=255) ttGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGcgccgc < 1:29475/68‑1 (MQ=255) tGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCgccgcc > 2:502180/1‑68 (MQ=255) tGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCgccgcc > 1:246935/1‑68 (MQ=255) | CAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG‑GCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGCGCCGCC > NC_000913/3625624‑3625741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |