New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3330463	20 (1.190)	3 (0.180)	3/120	1.6	13.0%	noncoding (4/98 nt)	RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	3740968 =	NA (NA)					noncoding (5/98 nt)	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Frequency below/above cutoff threshold.

GGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAG  >  NC_000913/3740901‑3741022                                                                    |                                                       tcaaaaagaaaccccggcacatggccggggcttcagattattgacaaagtgcgctttgtttatgccgg                                                        >  1:374554‑M2/68‑68 (MQ=255)   aaaaagaaaccccggcacatggccggggcttcagattattgacaaagtgcgctttgtttatgccgGAt                                                      <  2:464092‑M2/3‑1 (MQ=255)     ggggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGAttc                                                    <  1:378988/68‑3 (MQ=255)          gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc                                               <  1:171630/68‑1 (MQ=255)          gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc                                               <  2:581501/68‑1 (MQ=255)          gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc                                               <  1:85016/68‑1 (MQ=255)          gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc                                               <  2:251367/68‑1 (MQ=255)                    gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg                                     <  1:116787/68‑1 (MQ=255)                    gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg                                     <  2:643829/68‑1 (MQ=255)                    gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg                                     <  2:633046/68‑1 (MQ=255)                    gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg                                     <  1:553163/68‑1 (MQ=255)                     cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGc                                    >  1:363965/1‑68 (MQ=255)                        gccggggcttcagattattgacaaagtgcgctttgtttatgccgGATGCGCTACGCTTATCAGGCCTa                                 >  1:681727‑M2/45‑68 (MQ=255)                        acgagaTAGAAAGAGCCTGGTCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                 <  2:434744/66‑1 (MQ=255)                         agagATAGAAAGAGCCTTGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAc                                <  1:313071/68‑1 (MQ=255)                         agagATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAc                                <  2:89761/68‑1 (MQ=255)                         agagATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAc                                <  1:342103/68‑1 (MQ=255)                          gagaTAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACa                               <  1:46723/68‑1 (MQ=255)                          cggggcttcagattattgacaaagtgcgctttgtttatgccgGATGCGCTACGCTTATCAGGCCTACa                               <  2:681723‑M2/26‑1 (MQ=255)                                  aaGAGCCTGGGCTGAAAGTCACTAAATATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt                       <  1:186974/68‑1 (MQ=255)                                    gagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc                     >  2:542566/1‑68 (MQ=255)                                      tccTGGGCTGAAAGTCACTATACATTACCACATGCGCTACGCTTATAAAGCATACATGAATTATGCaa                   >  2:447587/2‑68 (MQ=16)                                         tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat                <  2:556369/68‑1 (MQ=255)                                          tgacaaagtgcgctttgttcatgcctGACGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata               <  2:115848‑M2/42‑1 (MQ=255)                                                 aaGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTTTCTGCAATATATTGAAtt        >  2:549886/1‑68 (MQ=255)                                                      aCTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaa   >  2:617034/1‑68 (MQ=255)                                                       cTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaag  <  1:62692/68‑1 (MQ=255)                                                                    |                                                       GGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAG  >  NC_000913/3740901‑3741022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.