| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 25 (0.780) | 8 (0.330) | 8/100 | 1.0 | 32.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 14 (0.580) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATT > NC_000913/1207739‑1207872 | taaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa < 1:1181027‑M1/17‑1 (MQ=255)taaaagcaggaatgatgcaatttgcttgttatttcatcattttcataaacgTTGGTTTGGGAGAaggg < 2:54956‑M1/17‑2 (MQ=255)cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:226293‑M1/68‑2 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGctctgc > 2:130682‑M1/1‑62 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 2:252371‑M1/68‑7 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 2:1095458/68‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 2:1096846/68‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 1:13356/68‑1 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 1:1032170‑M1/32‑1 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 2:79671‑M1/68‑17 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag < 1:1049366‑M1/33‑1 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg < 2:1103664/68‑1 (MQ=255) aTGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg < 2:1135403/68‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:687775/68‑1 (MQ=255) tgaCTTTGCAATCGGCTCTCGAAAACCTTTTTTTGGTAGAAGGAGCATTACTCAATGCTTCAACGGCt < 2:751864/66‑1 (MQ=16) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt < 2:51847/68‑1 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 2:1181025‑M1/26‑68 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 2:944131‑M1/26‑68 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:526511‑M1/26‑68 (MQ=255) aCTGTGCAATCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 2:752595/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 1:444574‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTAGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 2:490699/68‑1 (MQ=255) aCTGTGAAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:1040334/1‑68 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 2:1049365‑M1/25‑68 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 2:1032169‑M1/25‑68 (MQ=255) ctttgCAAACGGCGCTCGAAAACCTTTGTTAGGGAGATGGAGCAAAACTCAATGCAGCAACGGCTACa < 2:374362/65‑1 (MQ=37) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:515854/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:439090/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:1178312/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGCTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 2:338183/68‑1 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt < 1:804416‑M1/68‑33 (MQ=255) ctgCTCTCGAAAACCTTGGTTAGGGAGAAGGAGCAAAACTCAAAGAAGCAACGGCTACAATAGGACGc > 1:1092429/3‑68 (MQ=25) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcct > 2:187729‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:748369/49‑1 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 2:748369/1‑49 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:53103/1‑68 (MQ=255) cattttcataaacgTTGGTTTGTGAGAAGGAGCAAAACTCAATGCAGCATCGGCTACATTAGGACGCa > 2:136758‑M1/15‑68 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCTATTCAGCAACGGCTACATTAGGACGCACCGGtt < 1:767438/68‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttcc < 2:713504/68‑3 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 1:981976‑M1/4‑68 (MQ=255) aCCTTGTTTTGGGATAATGAGCAAAACTCAATGCATCAACGGCTACATTATGACGCACCGGTTTCAtt < 1:232435/68‑2 (MQ=255) cgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:626024‑M1/3‑36 (MQ=255) cgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 2:626024‑M1/34‑1 (MQ=255) cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc < 1:734800‑M1/68‑52 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 2:923868/68‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc > 1:1021279/1‑68 (MQ=255) tGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaa < 1:112880‑M1/68‑54 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg > 1:627272‑M1/1‑68 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg > 1:625669‑M1/1‑68 (MQ=255) gtGAGAAGGAGCAAAACTCAATGCAGCTACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 2:1042648‑M1/3‑68 (MQ=255) GGGAGAAGGATCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 2:1070380‑M1/1‑68 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt > 1:93656‑M1/1‑68 (MQ=255) AGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCGCCGGTTTCATAGCTATACCGGTTa < 2:340656‑M1/68‑1 (MQ=255) gaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct < 1:113564‑M1/68‑64 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt < 2:239552‑M1/68‑1 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt > 1:477250‑M1/1‑68 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa > 1:1117229‑M1/1‑1 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa > 1:929837‑M1/1‑1 (MQ=255) | CGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATT > NC_000913/1207739‑1207872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |