| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503–1979270 | 1979278 | 9–776 | 19 [0] | [0] 19 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 15 (0.530) | 11/116 | 0.8 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
GGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978437‑1978568 | ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta > 1:1046287‑M1/1‑66 (MQ=255) tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact < 1:218812‑M1/68‑14 (MQ=255) aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg < 1:858395‑M1/68‑18 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt < 2:1123579‑M1/68‑19 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact < 2:919258‑M1/61‑14 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact > 1:919258‑M1/1‑48 (MQ=255) gcgatGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgtgt < 1:899677‑M1/66‑26 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 2:466759‑M1/68‑30 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt > 1:525117‑M1/1‑38 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt > 1:370487‑M1/1‑38 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactattgttttgggtgtatttcaat > 1:378443‑M1/1‑33 (MQ=255) cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg > 1:958956‑M1/1‑30 (MQ=255) acacTCAAATACTTAACATAAATGtataagtcatacttttgttttgggagtatttcaatctgttaaaa > 1:522830‑M1/1‑24 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 2:552114‑M1/1‑14 (MQ=255) aCTTAACATAAATGtataagtcatacttatgttttgggtgtatttcaatctgttaaaaagtttttcgc > 2:32542‑M1/1‑14 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaatgtttttcgctacgctagcaag > 1:28467‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:672844‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:877427‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:1179892‑M1/1‑2 (MQ=255) | GGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978437‑1978568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |