New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1097101NA (NA)4 (0.140) 4/116 2.2 NA intergenic (+272/+464) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 = 1097105 NA (NA)intergenic (+276/+460) ycdU/serX putative inner membrane protein/tRNA‑Ser

GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAA  >  NC_000913/1097051‑1097165
                                                      |                                                            
gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc                                                 <  1:605124/68‑1 (MQ=31)
gcgcgcCCTGCGGGCAGCCCGCTCACTGCGCTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc                                                 <  1:899692/65‑1 (MQ=255)
 ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAcc                                                >  1:1016609/1‑68 (MQ=33)
  tcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAccc                                               >  2:878269/1‑68 (MQ=35)
                     cTCACTGCGTTCTCGGTCTGTCCAACTGGCTGTCGCCTGTTGTCGTCCCCCGGTCGGGGCTTCTCATc                            <  2:1079074/68‑1 (MQ=11)
                     cTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATc                            >  1:608492/1‑68 (MQ=35)
                         cTGCGTGCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccccc                        <  1:26785/68‑1 (MQ=25)
                          tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATcccccc                       >  1:469818/1‑68 (MQ=35)
                            cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCgg                     <  1:747701/68‑1 (MQ=35)
                               gcACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt                  <  1:36090/67‑1 (MQ=25)
                                cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtg                 >  2:1138219/1‑68 (MQ=35)
                                cACGGTCTGTCCAACTGGCGACAGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt                  >  2:1100734/1‑67 (MQ=11)
                                cACGGTCTGTCCAACTGGCGACAGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt                  <  1:1100736/67‑1 (MQ=11)
                                     tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa            >  2:505309/1‑68 (MQ=35)
                                               tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa  <  1:408636/68‑1 (MQ=40)
                                               tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa  >  2:236853/1‑68 (MQ=40)
                                               tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa  >  2:451040/1‑68 (MQ=40)
                                               tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa  >  2:459878/1‑68 (MQ=40)
                                                      |                                                            
GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAA  >  NC_000913/1097051‑1097165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.