| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2532662 | 28 (0.880) | 3 (0.100) | 3/124 | 2.8 | 9.2% | coding (254/972 nt) | cysK | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| ? | NC_000913 | = 2532707 | 33 (1.100) | coding (299/972 nt) | cysK | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTATGTAGCTGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGCTAAAGGCATGAAAGGC > NC_000913/2532641‑2532774 | ccTATGTAGCTGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGc > 1:440338‑M2/1‑67 (MQ=255) cTATGTAGCTGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGcc > 1:731520‑M2/1‑66 (MQ=255) gTAGCTGCCGCTCGCGGTTGCAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAGCGcggcgg < 2:522863‑M2/68‑7 (MQ=255) gTAGCTGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCaa > 1:310552/1‑68 (MQ=255) gTAGCTGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCaa > 2:748047/1‑68 (MQ=255) aGCTGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAGACCATGAGTATTGAACGCCGCAAgc > 2:171639/1‑68 (MQ=255) tGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAgctgc < 1:722479/68‑1 (MQ=255) tGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATAGAACGCCGCAAgctgc > 1:497468/1‑68 (MQ=255) gcgGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCg < 1:213525/68‑1 (MQ=255) cgGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGt < 2:1001363/68‑1 (MQ=255) aaaCTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGc > 1:952615/1‑68 (MQ=255) aCTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCaa > 2:829297/1‑68 (MQ=255) cTCACCCTGACCATGCCAGAAACCATGAGTATTGATCGCCGCATGCTGCTGAAAGCTTTAGGTGCaaa < 2:908177/68‑1 (MQ=38) tCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAAc < 1:977400/68‑1 (MQ=255) cACCCTGACCATGCCAGAAACCATGAGTATTGAACTCCGCAAGCTGCTGAAAGCGTTAGGTGCAAAcc < 2:1166887/68‑1 (MQ=255) ccTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTgg > 1:484810/1‑68 (MQ=255) aCCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCt > 1:451088/1‑68 (MQ=255) cATGCCAGAAACCATGAGTATTGAACGccgcgagcggcagctacataggccagtgcaatcccggtatt < 1:287900‑M2/68‑42 (MQ=255) gCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACgg < 1:889068/68‑1 (MQ=255) ccAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGa < 1:900494/68‑1 (MQ=255) aGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAg > 2:84535/1‑68 (MQ=255) aaaCCATGAGTATTGAACGCCGCAATCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGt < 1:1056409/68‑1 (MQ=255) aaaCCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGt < 2:1000350/68‑1 (MQ=255) aaaCCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGt < 1:681502/68‑1 (MQ=255) aaaCCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGt < 1:51429/68‑1 (MQ=255) aaCCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTg > 2:1027659/1‑44 (MQ=255) aaCCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTg < 1:1027660/44‑1 (MQ=255) aaCCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTg > 2:113932/1‑68 (MQ=255) aaCCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTg < 1:419412/68‑1 (MQ=255) aaCCATGAGTAGTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTg < 2:441396/68‑1 (MQ=255) aCCATGAGTAATGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGc > 2:722813/1‑68 (MQ=255) ccATGAGTATTGAACGccgcgagcggcagctacataggccagtgcaatcccggtattaccgctggtcg > 2:287900‑M2/1‑16 (MQ=255) gAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGCTAAAg < 2:223483/68‑1 (MQ=255) aGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGCTAAAgg < 1:829297/68‑1 (MQ=255) aGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGCTAAAgg < 2:981213/68‑1 (MQ=255) aCGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGCTAAAGGCATGAAAg > 1:446638/1‑68 (MQ=255) aCGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGCTAAAGGCATGAAAg > 1:107330/1‑68 (MQ=255) gccgcAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGCTAAAGGCATGAAAGgc > 1:797721/1‑68 (MQ=255) | CCTATGTAGCTGCCGCTCGCGGTTACAAACTCACCCTGACCATGCCAGAAACCATGAGTATTGAACGCCGCAAGCTGCTGAAAGCGTTAGGTGCAAACCTGGTGCTGACGGAAGGTGCTAAAGGCATGAAAGGC > NC_000913/2532641‑2532774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |