Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,770,2290CG61.5% ‑3.0 / 13.0 13intergenic (+83/+14)yibU/yibHpseudogene, H repeat‑associated protein/putative membrane fusion protein (MFP) component of efflux pump
Reads supporting (aligned to +/- strand):  ref base C (0/5);  new base G (8/0);  total (8/5)
Fisher's exact test for biased strand distribution p-value = 7.77e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.55e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

CTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACT  >  NC_000913/3770173‑3770294
                                                        |                                                                 
cTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATctcccccctccc                                                        <  2:543049/68‑1 (MQ=255)
cTAATGAAGTAATAAGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATctcccccctccc                                                        <  1:902162/68‑1 (MQ=255)
     gAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCa                                                   <  2:752745/68‑1 (MQ=255)
           atatGCAAAAATAATTAGACCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATc                                             <  2:1038267/68‑1 (MQ=255)
               gCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCGATAATGTGGGCCCAGCCCCGCAATGATCCaaa                                         >  1:642214/1‑68 (MQ=255)
                         ttAGTCCTTACAAGGAGCAAAGTTCCATACTGTAGGCCCTCCCACACAAAGATCCAAATAAAGAAAAt                               >  2:68382/1‑68 (MQ=255)
                         ttAGTCCTTACAAGGAGCAAAGTTCCATAATGTGGGACCGCCCCCACAAAGATCaaaataaaaatagt                               >  2:1096533/1‑66 (MQ=255)
                           aGTCCTTACAAGGAGCAGAGTTCCATAATGTGGGCCCTCCCCCTCAATGAGCCAAATAAAGAAAATga                             >  2:238901/1‑67 (MQ=255)
                           aGTCCTTACAAGGAGCAAAGTTGGATAGTGGGGGGGCGGCCCCGCAGTGATACAAATAAAGATAATga                             >  1:719376/1‑67 (MQ=255)
                             tCCTTACAAGGAGCAAAGTTCGATAATGTGGGACCGCCCCCGAAAAGAAAAAAAAAAAGATAATGCaa                           >  2:946706/1‑67 (MQ=255)
                                      ggAGCAAAGTTCCATAATGTGGGCCCTCCCCCACAATGATCCAAATAAAGAAAATGCATCCAGCTGGt                  >  1:192335/1‑68 (MQ=255)
                                         tcAAAGTTCCATAATCTCCCCCCTCCCCCTCTATGATCCAAATATAGATTATGCATCCAGCTGGTCAt               <  1:1096534/67‑1 (MQ=255)
                                         gCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt               <  2:719376/68‑1 (MQ=255)
                                              gTTCCATAATGTGGGCCCTCCCCCACAAAGATACAAATAAAGATAAAGCATCCAGCTGGTCAATCATa          >  1:120828/1‑68 (MQ=255)
                                                      aTCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACt  <  2:10811/68‑1 (MQ=255)
                                                        |                                                                 
CTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACT  >  NC_000913/3770173‑3770294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑