| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,585,681 | G→T | G381G (GGC→GGA) | ggt ← | gamma‑glutamyltranspeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,585,681 | 0 | G | T | 97.7% | 146.3 / NA | 43 | G381G (GGC→GGA) | ggt | gamma‑glutamyltranspeptidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (30/12); minor base A (1/0); total (31/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTTATCCACCACTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTGCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCAATAGAT > NC_000913/3585626‑3585741 | cTTTATCCACCACAGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTATCCGGGTCGAAtt > 1:659175/1‑68 (MQ=255) tATCCACCACTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCg > 2:211465/1‑68 (MQ=255) ccaccaCTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTg > 2:1112104/1‑68 (MQ=255) ccaccaCTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTg > 1:891411/1‑68 (MQ=255) ccaccaCTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTg > 1:702026/1‑68 (MQ=255) ccaccaCTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTg > 1:644023/1‑68 (MQ=255) acTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATgg > 2:944193/1‑68 (MQ=255) acTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATgg < 2:212817/68‑1 (MQ=255) acTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATgg > 1:1011428/1‑68 (MQ=255) acTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTATCCGGGGCGAATTTCGCTGGATgg > 2:815235/1‑68 (MQ=255) acTGAGTAATGGGAAGTTTGATTACTCTCATAAGGCGCGAGCTTTCCGGGGCGAATTTCGCTGGATgg > 2:878839/1‑68 (MQ=255) gTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCg > 2:816985/1‑68 (MQ=255) gTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCg > 1:558717/1‑68 (MQ=255) gTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCg > 1:904275/1‑68 (MQ=255) gTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCg > 1:1078241/1‑68 (MQ=255) tAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGc < 2:644023/68‑1 (MQ=255) tAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGc < 1:900166/68‑1 (MQ=255) aaTGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCt > 2:446220/1‑68 (MQ=255) tGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCttt < 2:543044/68‑1 (MQ=255) gTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTAtt > 1:104064/1‑68 (MQ=255) gTAGTTTGATTACTCTCATAAGGCGCAAGCTTTCAGGGGCGAATTTCGCTGGATGGCTTCGCTTTAtt > 1:272030/1‑68 (MQ=255) gTAGTTTGATTACTCTCATAAGGCGCAAGCTTAACGGGGCGAATTTAGCTGGATGGATTCGCTTTAtt > 1:282870/1‑68 (MQ=255) ttGATTACTATCAAAAGGCGCAAGCTATCCGGGGCGAAATTCGCTGGATGGCTTCGCTTTATTGataa > 2:1177692/1‑67 (MQ=255) aCTCTCATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAAttt > 2:1105044/1‑68 (MQ=255) tctcATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAAt > 2:1120328/1‑64 (MQ=255) tctcATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAAt < 1:1120330/64‑1 (MQ=255) tctcATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGa > 2:1113837/1‑68 (MQ=255) ctcATAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGAt > 1:170872/1‑68 (MQ=255) tAAGTCGCAAGCTTTCCGTGGCGAATTTCTCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGc < 1:1177694/68‑1 (MQ=255) tAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGc < 1:1113839/68‑1 (MQ=255) tAAGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGc < 1:816985/68‑1 (MQ=255) aaGGCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCa > 2:46195/1‑68 (MQ=255) ggCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCAAt > 1:991023/1‑68 (MQ=255) ggCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCAAt > 2:243707/1‑68 (MQ=255) ggCGCAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCAAt > 1:362903/1‑68 (MQ=255) ggCGCAAGCTTTCCGGGGAGAATTTCGCTGGATGGCTGCGCTTTAGTGATATCAATTTGATCGGCAAt > 2:191243/1‑68 (MQ=255) cgcAGGCTTTCCGGGGCGAATGTCGCTGGATGGCTTCGCTTTATTGATATCAAGTTGATCGGCGATAg > 2:644401/1‑68 (MQ=255) cgcAAGCTTTCCGGGGCGAATTTCGCTTGATGGCTTCGCTTTATAGATATCAATTTGATCGGCAATAg < 1:1019465/68‑1 (MQ=255) cgcAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCAATAg > 2:689637/1‑68 (MQ=255) cgcAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCAATAg > 1:533882/1‑68 (MQ=255) cgcAAGCTTTCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCAATAg < 1:1120747/68‑1 (MQ=255) cAAGCTTTCCGGGGCGAATTTCGCCGGATGGCGTCGCTTTATTGATATCAATCTGATCGGCAATAGac < 2:145365/68‑2 (MQ=255) cAAGCTTTCCGGGGCGAATTTCGCCGGACGGCTTCGCGTTATTGATATCAATTTGATCGGCAATAGac < 2:146955/68‑2 (MQ=255) | CTTTATCCACCACTGAGTAATGGGTAGTTTGATTACTCTCATAAGGCGCAAGCTTGCCGGGGCGAATTTCGCTGGATGGCTTCGCTTTATTGATATCAATTTGATCGGCAATAGAT > NC_000913/3585626‑3585741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |