New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	969360 =	10 (0.530)	3 (0.180)	3/114	1.5	27.8%	intergenic (+8/‑29)	lpxK/ycaQ	lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain
	?	NC_000913	969402 =	7 (0.430)					coding (14/1233 nt)	ycaQ	DUF1006 family protein with C‑terminal wHTH domain

GGTGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/969434‑969360 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC  >  NC_000913/969402‑969462                                                                                                                                          GGTGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACG                                                                      >  1:230384/1‑68        ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC                                                               >  1:351498/1‑68           cCGCGCATCAGCATGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCACTCTACCGCTGCCGCACC                                                            <  1:700589/67‑1                            AGAGGCGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCG                                           <  2:541401/68‑1                                                CATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGC                       >  1:14541/1‑68                                                                tgcCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAAC       <  1:491328/65‑1                                                                     CTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC  <  2:441461/68‑1                                                                                                                                          GGTGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/969434‑969360 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC  >  NC_000913/969402‑969462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.