| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503–1979269 | 1979278 | 10–776 | 20 [0] | [0] 19 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 16 (0.960) | 11/116 | 0.3 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG > NC_000913/1979212‑1979344 | gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt < 1:309583‑M2/1‑1 (MQ=255)gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt < 2:315824‑M2/1‑1 (MQ=255)gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt < 1:702273‑M2/1‑1 (MQ=255) tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt < 1:172841‑M2/7‑1 (MQ=255) tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATATGTCATACt < 2:229063‑M2/13‑1 (MQ=255) ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt < 2:301561‑M2/18‑1 (MQ=255) aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt > 2:642948‑M2/49‑68 (MQ=255) aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt > 2:165304‑M2/49‑68 (MQ=255) gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt < 1:272471‑M2/25‑1 (MQ=255) tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt > 1:337871‑M2/40‑68 (MQ=255) cgcagatcacacaaatcactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 1:140903‑M2/29‑1 (MQ=255) gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt > 2:85439‑M2/39‑68 (MQ=255) tcgcacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt > 1:176832‑M2/34‑68 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt > 2:128210‑M2/34‑62 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 1:128210‑M2/29‑1 (MQ=255) attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt > 2:22981‑M2/18‑68 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta > 1:523922‑M2/8‑68 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta > 2:543314‑M2/8‑68 (MQ=255) tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag > 2:15278‑M2/3‑68 (MQ=255) | CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG > NC_000913/1979212‑1979344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |