| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,413,571 | T→C | intergenic (‑106/‑293) | acrS ← / → acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,413,571 | 0 | T | C | 100.0% | 72.0 / NA | 20 | intergenic (‑106/‑293) | acrS/acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/11); total (9/11) | |||||||||||
AAAATAGCGAAGGTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACATCAA > NC_000913/3413508‑3413628 | aaaaTAGCGAAGGTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCCATaa > 1:551077/1‑68 (MQ=255) cGAAGGTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCCATAAATCGTta > 2:480855/1‑68 (MQ=255) gTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCCATAAATCGTtaaataa < 2:527465/68‑1 (MQ=255) tATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAatat < 1:101480/68‑1 (MQ=255) tgtgTATTTATACGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTa > 2:31441/1‑68 (MQ=255) tgtgGATTTATACGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTAtttc > 1:651296/1‑67 (MQ=39) tgtgAATTTATACGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTAtttc > 2:262683/1‑67 (MQ=39) tataCGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGAt > 1:352576/1‑68 (MQ=255) taCGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATAc > 1:142428/1‑68 (MQ=255) taCGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATAc < 2:44322/68‑1 (MQ=255) aCGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACa < 1:570466/68‑1 (MQ=255) cGAGAGGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACAt < 1:477322/68‑1 (MQ=255) agagGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAatatat < 2:389449/46‑1 (MQ=255) agagGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAatatat > 1:389449/1‑46 (MQ=255) agagGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTAc < 1:510897/55‑1 (MQ=255) agagGCTAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTAc > 2:510897/1‑55 (MQ=255) tAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACa < 1:420275/68‑1 (MQ=255) tAATATTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACa < 2:551078/68‑1 (MQ=255) atatTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACATc < 2:352576/68‑1 (MQ=255) atTGAGTTGCCATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACATCaa < 1:480855/68‑1 (MQ=255) | AAAATAGCGAAGGTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACATCAA > NC_000913/3413508‑3413628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |