| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1328562 | 29 (0.750) | 6 (0.170) | 5/120 | 2.8 | 16.5% | coding (551/759 nt) | yciK | putative EmrKY‑TolC system oxoacyl‑(acyl carrier protein) reductase |
| ? | NC_000913 | = 1328705 | 34 (0.950) | coding (408/759 nt) | yciK | putative EmrKY‑TolC system oxoacyl‑(acyl carrier protein) reductase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGGAAGGCGCTGGCACGCATTGCGGTGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1328492‑1328562‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctTCCTTTATTACTCAAATCGGACGCCGGTTCACTGGTCTTTACTTCATCAAGCGTTGGACGTCAGG < NC_000913/1328705‑1328641 CGGGAAGGCGCTGGCACGCATTGCGGTGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCT < 2:825894/68‑1CGGGAAGGCGCTGGCACGCATTGCGGTGCGCGTACCGCCTGGGGTAATGCAGTCGACACGCAGGCGCT < 2:675881/68‑1 GGGAAGGCGCTGGCACGCATTGCGGTGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCTG < 2:1347091/68‑1 GGAAGGCGCTGGCACGCATTGCGGTGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCTGC < 2:403233/68‑1 GAAGGCGCTGGCACGCATTGCGGCGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCTGCT < 2:220919/68‑1 CGGTGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCTGCTTCCTTTATTACTCAAATCGG > 2:845089/1‑68 GGTGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCTGCT > 1:575328/1‑47 GGTGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCTGCT < 2:575325/47‑1 CTGGGTTAATGCAGTTGACACGCAGGCGCTGCTTCCTTTATTACTCAAATCGGACGCCGGTTCACTGG < 1:805809/68‑1 TGGGTTAATGCAGTTGACACGCAGGCGCTGCTTCCTTTATTACTCAAATCGGACGCCGGTTCACTGGT < 1:845094/68‑1 GGGTTAATGCAGTTGACACGCAGGCGCTGCTTCCTTTATTACTCAAATCGGACGCCGGTTCACTGGTC < 2:1459435/68‑1 GCAGTTGACACGCAGGCGCTGCTTCCTTTATTACTCAAATCGGACGCCGGTTCACTGGT < 1:231788/59‑1 GCAGTTGACACGCAGGCGCTGCTTCCTTTATTACTCAAATCGGACGCCGGTTCACTGGT > 2:231786/1‑59 GCTTCCTTTATTACTCAAATCGGCCGCCGGTTCACTGGTCTTTACTTCATCAAGCGTTGGACGTCAGG > 1:565206/1‑68 GCTTCCTTTATTACTCAAATCGGACGCCGGTTCACTGGTCTTTACTTCATCAAGCGTTGGACGTCAGG > 1:1040493/1‑68 CGGGAAGGCGCTGGCACGCATTGCGGTGCGCGTACCGCCTGGGTTAATGCAGTTGACACGCAGGCGCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1328492‑1328562‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctTCCTTTATTACTCAAATCGGACGCCGGTTCACTGGTCTTTACTTCATCAAGCGTTGGACGTCAGG < NC_000913/1328705‑1328641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |