| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315401 = | NA (NA) | 15 (0.480) | 7/104 | 1.8 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
TTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/315479‑315401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggctgagttcaGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGG > NC_000913/315627‑315691 TTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACA > 1:668010/1‑68 TCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAG > 2:1357454/1‑68 CACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGG < 1:462713/68‑1 CACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGG < 1:351622/68‑1 CACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGG < 1:511286/68‑1 GTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTG > 2:187888/1‑68 TTCAGAAGACGTCTGCTGATTTTGCTGTTTTCTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGA < 1:1235654/68‑1 TTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGA > 2:1443665/1‑68 TTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGA > 2:1253157/1‑68 TTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGA > 1:295358/1‑68 TTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGA > 1:1168350/1‑68 TTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGG < 1:1290355/64‑1 TTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGG > 2:1290351/1‑64 TCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAG < 1:1066925/68‑1 AGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTT < 2:743742/68‑1 AGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTT < 1:292988/68‑1 AGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTT < 2:454463/68‑1 AGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTT < 1:792638/68‑1 AGAAGACGTCTGCTGATTTTGCCGCTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCCGAGct < 2:556175/68‑3 GAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTC < 1:122642/68‑1 GACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCgcg > 2:1340496/1‑65 CTGATTTTGCTGTTTACTGCTCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGC < 1:412094/68‑1 CTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGC < 1:1037769/68‑1 GATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGCAA > 2:1234655/1‑68 GATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGCAA > 1:1038213/1‑68 GATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGCAA < 1:464352/68‑1 CTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGCAATGTGCCG > 1:557059/1‑68 CTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGCAATGTGCCG > 1:28016/1‑68 CTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGC > 1:1072759/1‑59 CTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGC < 2:1072754/59‑1 CTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCAT‑CAGGCTGAGTTCAGCATCAAAGCAATGTGCCGC > 2:146003/1‑68 CTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCAT‑CAGGCTGAGTTCAGCATCAAAGCAATGTGCCGC > 2:1395448/1‑68 ACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCT > 2:105356/1‑68 ACTGCGCCAGTTGTAGAGTTGTGATTCAT‑CAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTTCTC < 1:146005/68‑1 CTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTC < 2:28016/68‑1 GATTCATACAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGG > 2:875890/1‑68 CAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTG < 2:711912/68‑1 GCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTG > 2:645903/1‑68 GCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTG > 1:1041877/1‑68 GCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTG > 1:63300/1‑68 GCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTG > 2:547418/1‑68 GCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCACGCAGCGGCTGGTATACGTGGTG > 2:504090/1‑68 GCTGAGATAAGCATCAAAGCAATGTGACGCGTGCTCCGGATGGCCCGCAGCGGCTGGTATACGTGGTG > 1:385251/1‑68 CTGAGTTCATCATCAAAGCAATGTGCCGCGTGCTCCAGGTGGCACGCAGCGGCTGGTATACGTGGTGT > 1:1428615/1‑68 CTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGT > 2:545618/1‑68 CTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGT > 1:1120213/1‑68 GTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGC > 1:1210672/1‑68 GTTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGC > 1:397839/1‑68 TTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGG < 1:898541/51‑1 TTCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGG > 2:898536/1‑51 TCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGG > 2:410812/1‑68 TCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGG > 2:221611/1‑68 TCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGG > 2:219115/1‑68 TCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGG > 1:338377/1‑68 TCAGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGG > 2:1218124/1‑68 TTCACGTTCAGAAGACGTCTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGTTGTGATTCATACAGGCTGAGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/315479‑315401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggctgagttcaGCATCAAAGCAATGTGCCGCGTGCTCCGGGTGGCCCGCAGCGGCTGGTATACGTGGTGTCAGCGG > NC_000913/315627‑315691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |