| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2962659 | 40 (1.030) | 5 (0.130) | 5/126 | 2.9 | 11.7% | coding (106/324 nt) | ppdC | putative prepilin peptidase‑dependent protein |
| ? | NC_000913 | = 2962936 | 37 (0.980) | coding (221/408 nt) | ygdB | DUF2509 family protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTTGCTGCCAGCCATGCCGCCAGAGCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGC > NC_000913/2962592‑2962726 | gTTTGCTGCCAGCCATGCCGCCAGAGCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGT < 2:1453057‑M1/68‑1 (MQ=255) ctgcCAGCCATGCCGCCAGAGCTGTTGGCACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCt < 2:600485/68‑1 (MQ=255) gccaTGCCGCCAGAGCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAAc < 1:672166/68‑1 (MQ=255) gccAGAGCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAAc > 2:494394/1‑68 (MQ=255) agagCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTacgctgaaaccgatgcccaggt > 2:432601‑M1/1‑46 (MQ=255) agCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGt < 1:1143331/68‑1 (MQ=255) agCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGt < 1:1326460/68‑1 (MQ=255) gCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTg > 1:1114611/1‑68 (MQ=255) cTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACg < 1:1349605/62‑1 (MQ=255) cTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACg > 2:1349600/1‑62 (MQ=255) tGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTacgctgaaaccgatgcccaggtttgtttgc > 2:1419289‑M1/1‑38 (MQ=255) gTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAatca > 2:1030530/1‑68 (MQ=255) gTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAatca < 1:734123/68‑1 (MQ=255) gTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAatca < 1:732282/68‑1 (MQ=255) cTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAAtcatca > 2:859130/1‑68 (MQ=255) ttttttCTGCTGGCAAGACAGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGCGACAATCATCAc < 2:1462638/65‑1 (MQ=255) tGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTTGATACCCGATAACGCCGTGACAATCATCAc < 2:366773/68‑1 (MQ=255) ggTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCAcc < 1:257806/68‑1 (MQ=255) gTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCa < 1:562825/68‑1 (MQ=255) tttCTGCTGGCAAGACTGTTCATTAATGTacgctgaaaccgatgcccaggtttgtttgcgtttactgg > 1:1433144‑M1/1‑29 (MQ=255) tttCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGt < 2:1327591/53‑1 (MQ=255) tttCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGt > 1:1327595/1‑53 (MQ=255) tttCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCAt > 2:792035/1‑68 (MQ=255) tttCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCAt > 1:233329/1‑68 (MQ=255) tttCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCAt > 1:98754/1‑68 (MQ=255) tttCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCAt > 2:787132/1‑68 (MQ=255) tCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCAACATCa > 1:1372030/1‑68 (MQ=255) gctgGCAAGACTGTTCATTAATGTTCGCTGGAAAccc > 2:1227185/1‑37 (MQ=255) gctgGCAAGACTGTTCATTAATGTTCGCTGGAAAccc < 1:1227189/37‑1 (MQ=255) gctgGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAaca > 2:315345/1‑68 (MQ=255) gctgGCAAGACTGGGCATAAATGTTCGCAGGAAACCCGATAACGCAGTGACAATAATCACCATCAaca > 2:204344/1‑68 (MQ=255) ctgGCAAGACTGTTCATTAATGTacgctgaaaccgatgcccaggtttgtttgcgtttactggcagata < 2:1433139‑M1/68‑46 (MQ=255) tgGCAAGACTGTTCATTAATGTacgctgaaaccgatgcccaggtttgtttgcgtttactggcagataa < 1:1419294‑M1/68‑47 (MQ=255) tgGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACAcc < 2:398405/68‑1 (MQ=255) gCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCAt < 1:605720/68‑1 (MQ=255) aGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGc < 2:10947/68‑1 (MQ=255) gctCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACa < 1:1178308/66‑1 (MQ=255) tCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACAtt > 1:596072/1‑68 (MQ=255) cATTAATGTTCGCTGGAGACCCGATAACGCAGTGACAATCATCGCCATCAACACCATCGCCAACATTa > 2:185276/1‑68 (MQ=255) aaTGTTCGCTGGAAGCCCGATAACGCAGTGCCAATCATCACCATCAACACCATCGACAACATTACCta > 1:721852/1‑67 (MQ=255) aaTGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTc > 2:1408595/1‑68 (MQ=255) aaTGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTc > 1:362709/1‑68 (MQ=255) aaTGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTc > 2:614188/1‑68 (MQ=255) tGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACGCCATCGCCAACATTACCTCCg > 1:919725/1‑68 (MQ=255) tGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCg > 2:744236/1‑68 (MQ=255) tGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACAGTCGCCAACATTACATCCg > 1:1285256/1‑68 (MQ=255) tacgctgaaaccgatgcccaggtttgtttgcgtttactggcagataatgaagccttattgattgccgg < 1:781604‑M1/68‑68 (MQ=255) | GTTTGCTGCCAGCCATGCCGCCAGAGCTGTTGGTACTGGTTTCTGCTGGCAAGACTGTTCATTAATGTTCGCTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGC > NC_000913/2962592‑2962726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |