| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 34 [0] | [1] 34 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 25 (0.740) | 19/114 | 0.3 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC > NC_000913/1978435‑1978569 | ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAGACACTCAATTACTTAACATAAATG > 2:1801‑M1/1‑68 (MQ=255) ggtggctgCGATTTTCTATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 2:64499‑M1/65‑2 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 1:114621‑M1/68‑2 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 2:289067‑M1/68‑2 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 1:648732‑M1/68‑2 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta > 1:1209477‑M1/1‑66 (MQ=255) gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat > 1:540479‑M1/1‑65 (MQ=255) gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACAT‑AATGtataagtcata < 2:333168‑M1/68‑12 (MQ=255) tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact < 1:77707‑M1/68‑14 (MQ=255) tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact < 2:1107823‑M1/68‑14 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt > 2:1345569‑M1/1‑48 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt > 1:1432734‑M1/1‑48 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtc < 1:642600‑M1/56‑9 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtc > 2:642596‑M1/1‑48 (MQ=255) tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg > 1:637923‑M1/1‑46 (MQ=255) gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgt < 1:286174‑M1/68‑28 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:85797‑M1/68‑30 (MQ=255) acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttctatct > 1:21556‑M1/1‑31 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgaatttcaatctgt > 1:573273‑M1/1‑29 (MQ=255) aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaa > 2:180726‑M1/1‑26 (MQ=255) aTTACTTAGCATAAATGtataagtcatacttttgttttgggt > 2:792551‑M1/1‑17 (MQ=255) aTTACTTAACATAAATGtataagtcatacttttgttttgggt < 1:792556‑M1/42‑26 (MQ=255) ttACTTAACATAAATGtataagtcaaacttttgttttgggtgtatttcaatctgttaaaaagttattc > 2:1373512‑M1/1‑16 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgg > 2:972408‑M1/1‑14 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgg < 1:972413‑M1/37‑24 (MQ=255) tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac < 2:1175572‑M1/68‑58 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta > 2:1172254‑M1/1‑7 (MQ=255) tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctag > 2:420904‑M1/1‑6 (MQ=255) tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttattcgctacgctag < 1:596328‑M1/68‑63 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 2:302412‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 2:346512‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 2:81258‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:1057711‑M1/1‑2 (MQ=255) gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc < 2:116422‑M1/68‑68 (MQ=255) | GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGC > NC_000913/1978435‑1978569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |