| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 42 [0] | [0] 42 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 38 (1.120) | 24/114 | 0.1 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGG > NC_000913/258619‑258749 | ttgacaccctcagagcagatttatcaaaaaacttaccccactaggcccgtatattcgtgaatgtaAGt < 2:993317‑M2/3‑1 (MQ=255)tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 2:1462677‑M2/3‑1 (MQ=255)tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:418518‑M2/3‑1 (MQ=255) ggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg > 2:346587‑M2/65‑68 (MQ=255) gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 2:1239984‑M2/64‑68 (MQ=255) acccgaagagcagatagatctaaaaatataccgcactagtcccgtatattcgtgaaggtaAGTGCaaa < 1:320980‑M2/8‑1 (MQ=255) ccgaagagcatactgatcaaaaaatttaccgcactaggcccgtatattcgcgaatgtaAGTGCAAAGa < 2:942502‑M2/10‑1 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa < 1:1201210‑M2/10‑1 (MQ=255) cgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:240830‑M2/3‑1 (MQ=255) cgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt > 2:240828‑M2/58‑60 (MQ=255) gaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa > 2:218347‑M2/57‑68 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 1:610381‑M2/4‑1 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg > 2:610377‑M2/53‑56 (MQ=255) gcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATcgg > 2:253103‑M2/52‑67 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaTGTGCAAAGTTAATCGATTCtt > 1:25477‑M2/47‑68 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt < 1:510228‑M2/22‑1 (MQ=255) caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg < 1:1323050‑M2/27‑1 (MQ=255) aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt < 2:272954‑M2/30‑1 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg > 1:1168758‑M2/38‑68 (MQ=255) aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:774203‑M2/32‑1 (MQ=255) aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 2:1361080‑M2/32‑1 (MQ=255) atttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc < 1:238783‑M2/33‑1 (MQ=255) accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:924732‑M2/11‑1 (MQ=255) accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt > 2:458766‑M2/32‑42 (MQ=255) accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt > 2:924727‑M2/32‑42 (MQ=255) accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt < 1:458769‑M2/11‑1 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt > 2:1372185‑M2/25‑42 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt < 1:1372190‑M2/18‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 2:704029‑M2/21‑68 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 1:1136304‑M2/21‑68 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 1:1054685‑M2/21‑68 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 2:1121957‑M2/21‑68 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 1:1249634‑M2/21‑68 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGAGTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 2:1123787‑M2/21‑68 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATAGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 2:198253‑M2/21‑68 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg < 2:586135‑M2/51‑1 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc > 2:829985‑M2/11‑68 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc > 1:60533‑M2/11‑68 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg < 2:161511‑M2/60‑1 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg < 2:1080115‑M2/60‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCg > 2:1364348‑M2/4‑68 (MQ=255) taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCgg > 2:1390411‑M2/3‑68 (MQ=255) | ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGG > NC_000913/258619‑258749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |