| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 381375 | NA (NA) | 4 (0.220) | 3/118 | 1.8 | NA | noncoding (116/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381732 | NA (NA) | noncoding (473/1331 nt) | IS2 | repeat region | |||||
ATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/381302‑381375‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggagaCAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGC < NC_000913/381732‑381666 ATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGC > 2:731239/1‑68ATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGC > 1:515407/1‑68ATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGC > 1:512521/1‑68ATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTAAGGGC > 1:116911/1‑68ATAAGTGATAGTCTTAATACTAGTTTTTAGAATAGACATTGGAGAAAAGATGATTGATGTCTTAGGGC > 1:673561/1‑68ATAAGTGATAGTCTTAATACTAGTTATTAGACTAGTCATTGGAGAACAGATGCTTGAAGTCTTAGGGC > 1:673562/1‑68 AAGTGATAGTCTTAATGCTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG > 1:662319/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAGCAGATGATTGATGTCTTAGGGCCG > 1:509464/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCag > 2:3139/1‑66 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG > 1:593181/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG > 2:754970/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG > 2:297431/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG > 1:344530/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG > 1:21766/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG > 1:433260/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG > 1:277729/1‑68 AAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAATGATGTCTAAGGGCCG > 2:392563/1‑68 cTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGATCAGATTATTGCTGTCTTAGGGCCGGA < 1:200661/67‑1 TGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG > 1:543814/1‑68 TGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG > 1:254700/1‑68 TGATAGTCTAAATACTAGTTTTTAGACTAGTCTTTGGAGATCAGATGATTGATGTCTAAGGGCCGGAG > 2:95950/1‑68 TGATAGACATAATACTAGAAATTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG > 2:496346/1‑68 GATAGTCTAAAAACTAGTTATTAGACAAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGA > 2:693077/1‑68 CAGATGATTGATGTCTTTGGGCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAA < 1:576197/68‑1 CAGATGATTGATGTCTTAGGGCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAA < 1:523311/68‑1 TGATTGATGTCTTAGGGCCGGAGACAACGGCTGACTAAGCTTACTCCCCAT > 1:104874/1‑51 TGATTGATGTCTTAGGGCCGGAGACAACGGCTGACTAAGCTTACTCCCCAT < 2:104874/51‑1 CCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTT < 1:253691/68‑1 CGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTgt > 1:1530/1‑66 CGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTT > 2:439622/1‑68 GAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTT > 1:289528/1‑68 GACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTG > 1:403826/1‑68 ACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGC > 2:148444/1‑68 ACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGC > 2:725056/1‑68 ACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGC > 2:344531/1‑68 ACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAAT < 2:424106/39‑1 ACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAAT > 1:424105/1‑39 ACAACGGCTGACTAAGCTTACTCACCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTATTTGC > 1:650965/1‑68 ATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/381302‑381375‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggagaCAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGC < NC_000913/381732‑381666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |