| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 381480 | NA (NA) | 5 (0.260) | 3/126 | 1.9 | NA | noncoding (221/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381788 | NA (NA) | noncoding (529/1331 nt) | IS2 | repeat region | |||||
ATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/381411‑381480‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaTCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGAC < NC_000913/381788‑381722 ATTGTTCAGCAGATCTTTGAACCGGGGATGAAGGTCTCCCTCGTTGACCGGCAACATGGTGTAGCAGC > 2:308688/1‑68ATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGC < 1:230953/68‑1ATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGC > 1:276511/1‑68ATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGC > 1:440931/1‑68ATTGTTAAGCAGAGCTATGAACCGGGGATGACGGTCTCCCTCTTTGACCGGCAACATGGTGTAGCAGC > 2:106538/1‑68 TGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCA > 2:502191/1‑68 TCGTTGCCCGGCAACATGGTGTAGCAGCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGC > 1:381577/1‑68 GCCCGGCAACATGGTGTAGCAGCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACG < 2:381578/68‑1 GCCCGGCAACATGGTGTAGCAGCCACCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACG < 1:224545/68‑1 TAGCAGCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACG > 1:354014/1‑52 TAGCAGCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACG < 2:354015/52‑1 CCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTG < 1:272110/68‑1 CCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTG < 1:630772/68‑1 ATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGAC < 2:95087/68‑1 ATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/381411‑381480‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaTCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGAC < NC_000913/381788‑381722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |