New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3091309 =	11 (0.550)	4 (0.220)	3/118	1.8	25.1%	coding (176/732 nt)	rsmE	16S rRNA m(3)U1498 methyltransferase, SAM‑dependent
	?	NC_000913	3091468 =	14 (0.790)					coding (335/732 nt)	rsmE	16S rRNA m(3)U1498 methyltransferase, SAM‑dependent

CCGAGGTGAATATGCAGCGGAGATTCGCGATCGTCGATCTGGCCTTCCAGCACCTTCACTTCCACGCTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3091381‑3091309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttttCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGAT  >  NC_000913/3091468‑3091534                                                                                                                                              CCGAGGTGAATGTGCAGCGGAGATTCGCGATCGTCGATCTGGCCTTCCAGCACCTTCACTTCCACGCT                                                                          >  1:444132/1‑68                      GATTCGCGATCGTCGATCTGGCCTTCCAGCACCTTCACTTCCACGCTTTTTTCTGAGCGCTGCGGCGT                                                     <  1:359761/68‑1                      GATTCGCGATCGTCGATCTGGCCTTCCAGCACCTTCACTTCCACGCTTTTTTCTGAGCGCTGCGGCGT                                                     <  1:573692/68‑1                             GATCGTCGATCTGGCCTTCCAGCACCTTCACTTCCACGCTTTTTTCTGAGCGCTGCGGC                                                       <  1:197714/59‑1                             GATCGTCGATCTGGCCTTCCAGCACCTTCACTTCCACGCTTTTTTCTGAGCGCTGCGGC                                                       >  2:197714/1‑59                                                                         TCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGAT  >  2:560557/1‑68                                                                                                                                              CCGAGGTGAATATGCAGCGGAGATTCGCGATCGTCGATCTGGCCTTCCAGCACCTTCACTTCCACGCTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3091381‑3091309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttttCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGAT  >  NC_000913/3091468‑3091534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.