| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 670713 = | 18 (0.900) | 3 (0.180) | 3/110 | 1.6 | 19.4% | coding (893/1032 nt) | holA | DNA polymerase III, delta subunit |
| ? | NC_000913 | 670903 = | 10 (0.600) | coding (703/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGACTGACCGTAATCTTGTTTGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCGATTTAACGCCTCGCCCATCATGCCCCGGCGGTTCTGCCATAC > NC_000913/670648‑670774 | ctgactgcCCGTAATCTTGTTTGAGGGTGAGTTCCGATCGTGTCAGGAGTAGCACGGCCTGTCGTAAc > 2:144313/1‑68 (MQ=255) gactgacCGTAATCTTGTTTGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTg > 2:354878/1‑68 (MQ=255) ttttcattgggctgatgctttgttgatgggaaaaagtaagcgcgcattgcatattcttcagcAACTGc > 1:356687‑M1/63‑68 (MQ=255) actgacCGTAATCTTGTTTGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGc < 2:499097/68‑1 (MQ=255) ctgacCGTAATCTTGTTTGAGGGTGAGTTCCGTCCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCg < 2:160032/68‑1 (MQ=255) ctgacCGTAATCTTGTTAGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCg < 2:718925/68‑1 (MQ=255) tcattgggttgatgctttgttgatgggaaaaagtaagagcgcatagcatattcttcagcAAATGCGTc < 2:181142‑M1/9‑1 (MQ=255) attgggttgatgctttgttgatgggaaaaagtaagcgcgcattgcatattcttcagcAACTGCGTCTg < 1:70245‑M1/11‑1 (MQ=255) cTTGTTTGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAg > 1:418392/1‑68 (MQ=255) tGTTTGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCg > 2:534981/1‑68 (MQ=255) tttGAGGGCGAGTTCCGTTCGTGTCAGGAGCTGCACGGCCTGACGTAACTGCGGCTGACTTAAGCGAt < 1:100220/68‑1 (MQ=255) ttGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCGAtt > 1:82903/1‑68 (MQ=255) ttGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCGAtt > 2:187603/1‑68 (MQ=255) gttgatgggaaaaagtaagcgcgcattgcatattcttcagcAACTGCGTCTGACTTAAGCGATTTAAc < 2:470999‑M1/27‑1 (MQ=255) gggTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCGATTTAAc > 2:496910/1‑68 (MQ=255) ttgatgggaaaaagtaagcgcgcattgcatattcttcagcAACTGCGTCTGACTTAAGCGATTTAACg > 2:70245‑M1/41‑68 (MQ=255) ggTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCGATTTAACg < 1:126641/68‑1 (MQ=255) ggTGAGTTCCGGTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCGATTTAACg < 1:219357/68‑1 (MQ=255) ggTGAGTTCCGATCGTGTCAGGAGTTGCACGGCATGCCGTAGCTGCGTCTGAATTAAGCGATTTAACg > 1:450855/1‑68 (MQ=255) gtCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCGATTTAACGCCTCGCCCATCATGcc < 1:354877/68‑1 (MQ=255) tattcttcagcAACTGCGTCTGACTTAAGCGATTTAACGCCTCGCCCATCATGCCCCGGCGGTTCTGc < 2:57416‑M1/57‑1 (MQ=255) cGGCCTGACGTAACTGCGTCTGACTTAAGCGATTTAACGCCTCGCCCATCATGCCCCGGCGGTTCTGc < 2:287320/68‑1 (MQ=255) tGACGTAACTTCGTCTGACTTAAGCGATTTAACGCCTCGCCCATCATGCCCCGGCGGTTCTGCCATAc < 2:109393/68‑1 (MQ=255) tGACGTAACTGCGTCTGACTTAAGCGATTTAACGCCTCGCCCATCATGCCCCGGCGGTTCTGCCATAc < 2:602638/68‑1 (MQ=255) | CTGACTGACCGTAATCTTGTTTGAGGGTGAGTTCCGTTCGTGTCAGGAGTTGCACGGCCTGACGTAACTGCGTCTGACTTAAGCGATTTAACGCCTCGCCCATCATGCCCCGGCGGTTCTGCCATAC > NC_000913/670648‑670774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |