| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 22 (1.100) | 5 (0.330) | 5/100 | 1.0 | 26.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 11 (0.730) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATT > NC_000913/1207741‑1207872 | tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc < 1:130014/68‑1 (MQ=255) ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa > 2:216785/1‑68 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca > 1:84339‑M1/1‑61 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca < 2:222574‑M1/68‑8 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 2:235546/68‑1 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 1:593693/68‑1 (MQ=255) cGGATGGCACTGTGCACACGGCTCTCGAAACCCTAGGTTTGGGAGAAGGAGCAAAACTCAATgaagca > 2:331330/1‑68 (MQ=25) cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt > 2:385925‑M1/1‑49 (MQ=255) cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca > 2:274016/1‑68 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 2:657836/68‑1 (MQ=255) aTGGCTCTGTGCAAACGGCGCTCGATAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 1:204811‑M1/68‑23 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 2:564581/68‑1 (MQ=255) tGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 2:62010/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 2:395418/68‑1 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc > 1:729004/1‑39 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc < 2:729005/39‑1 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcct > 2:143890‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 2:723786/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:443099/1‑68 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:166525/57‑1 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 2:166525/1‑57 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACTGCTACATTAGGACGCACCGGt < 2:110008/68‑1 (MQ=255) gTTTGGGAGAAGGAGCAAAACTCAATGCAGCATCGGCTACATTAGGACGCACCGGTTTCATAGCtata < 1:331330/68‑1 (MQ=255) tttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:441207‑M1/1‑12 (MQ=255) tGGGAGAAGGctctgcattacctgtttgtgtcccgtgtccgtggccttcagccactccgccaacaggc < 2:172845‑M1/68‑59 (MQ=255) gggAGAAGTAGCAAAACTCAATGCAGCATCGGCTACATTATGTCTCACCGGTTTCATAGCTATACCgg < 2:82005/68‑1 (MQ=255) gggAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg < 1:255057/68‑1 (MQ=255) ggAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTCATAGCTATACCGGt < 2:79243/68‑1 (MQ=255) gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg > 2:388601‑M1/1‑7 (MQ=255) gagaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt > 1:314071/1‑68 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa > 2:476215‑M1/1‑1 (MQ=255) | TTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATT > NC_000913/1207741‑1207872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |