New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4341778 =	16 (0.800)	5 (0.350)	3/96	1.4	39.1%	intergenic (‑150/‑133)	melR/melA	melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
	?	NC_000913	4341834 =	4 (0.280)					intergenic (‑206/‑77)	melR/melA	melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding

TTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGC  >  NC_000913/4341776‑4341894                                                           |                                                             ttATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTg                                                     >  1:544178/1‑68 (MQ=255)   ATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGATCAACCTGGa                                                   <  2:39648‑M1/68‑1 (MQ=255)      CCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGc                                                >  2:559674‑M1/1‑68 (MQ=255)             ACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGt                                         >  1:111473‑M1/1‑68 (MQ=255)               TCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGttt                                       <  1:677374‑M1/68‑1 (MQ=255)               TCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGttt                                       <  1:432817‑M1/68‑1 (MQ=255)               TCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGttt                                       <  1:537734‑M1/68‑1 (MQ=255)               TCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCGCAACCTGGAAGCCGGAGGttt                                       <  1:676510‑M1/68‑1 (MQ=255)                      ctgcgtgaagcagcagtaaatctgagtttatgggaatGCTCAACCTGGAAGCCGGAGGTTTTCTGCAg                                <  1:135564‑M2/31‑1 (MQ=255)                         tgctgcTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGAtt                             >  2:39007/1‑68 (MQ=255)                         cgtgaagcagcagtaaatctgagtttatgggaatGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGAtt                             >  1:670205‑M2/35‑68 (MQ=255)                         cgtgaagcagcagtaaatctgagtttatgggaatGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGAt                              >  1:293381‑M2/35‑67 (MQ=255)                         cgtgaagcagcagtaaatctgagtttatgggaatGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGAt                              <  2:293381‑M2/33‑1 (MQ=255)                         cgagaagcagcagtaaatctgagattatgggaatGCTCAACATGGAAGCCGGAGGTATTCAGCAGAtt                             >  2:135564‑M2/35‑68 (MQ=255)                                 cACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGcc                     <  2:556019/68‑1 (MQ=255)                                   cGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCat                   <  1:251734/68‑1 (MQ=255)                                         atctgagtttatgggaatGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGaa             <  2:216191‑M2/50‑1 (MQ=255)                                                    tgggaatGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTcaagc  >  1:193468‑M2/8‑68 (MQ=255)                                                    tgggaatGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTcaagc  >  2:504268‑M2/8‑68 (MQ=255)                                                           |                                                             TTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGC  >  NC_000913/4341776‑4341894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.