New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 99235314 (0.700)3 (0.170) 3/116 1.7 22.8% coding (1732/2613 nt) pepN aminopeptidase N
?NC_000913 = 992429 8 (0.460)coding (1808/2613 nt) pepN aminopeptidase N

AGGTCAGCCGCTGTCTCTGCCGGTGCATGTGGCTGATGCTTTCCGCGCGGTACTGCTTGATGAGAAGATTGATCCAGCGCTGGCGGCAGAAATCCTGACGCTGCCTTCTGTCAATGAAATG  >  NC_000913/992376‑992496
                                                     |                                                                   
aGGTCAGCCGCTGTCTCTGCCGGTGCATGTGGCTGATGCTTTCCGCGCGGTACTGCTTGATGagaaga                                                       <  2:734631/68‑1 (MQ=255)
     aGCCGCTGTCTCTGCCGGTGCATGTGGCTGATGCTTTCCGCGCGGTACTGCTTGATGAGAAGATTGAt                                                  <  2:228926/68‑1 (MQ=255)
         gCTGTCTCTGCCGGTGCATGTGGCTGATGCTTTCCGCGCGGTACTgcttgatgtaggttgccagcaaa                                              <  1:569154‑M2/68‑24 (MQ=255)
                       tGCATGTGGCTGATGCTTTCCGCGCGGTACTGCTTGATGAGAAGATTGATCCAGCGCTGGCGGCAGaa                                >  1:326103/1‑68 (MQ=255)
                       tGCATGTGGCTGATGCTTTCCGCGCGGTACTGCTTGATGAGAAGATTGATCCAGAGCTGGCGGCAGaa                                >  1:80165/1‑68 (MQ=255)
                         cATGTGGCTGATGCTTTCCGCGCGGTACTGCTTGATGAGAAGATTGATCCAGCGCTGGCGGCAGAAAt                              >  1:241352/1‑68 (MQ=255)
                             tgGCTGATGCTTTCCGCGCGGTACTgcttgatgtaggttgccagcaaactttgcgccgcatcccagcg                          <  1:713493‑M2/68‑44 (MQ=255)
                               gCTGATGCTTTCCGCGCGGTACTGCTTGATGAGAAGATTGATCCAGCGCTGGCGGCAGAAATCCTGAc                        >  1:194785/1‑68 (MQ=255)
                                     gCTTTCCGCGCGGTACTgcttgatgtaggttgccagcaaactttgcgccgcatcccagcgggagaaat                  >  2:713494‑M2/1‑17 (MQ=255)
                                             cgcgGTACTGCTTGATGAGAAGATTGATCCAGCGCTGGCGGCAGAAATCCTGACGCTGCCTTCTGTCa          >  1:375676/1‑68 (MQ=255)
                                                     tGCTTGATGAGAAGATTGATCCAGCGCTGGCGGCAGAAATCCTGACGCTGCCTTCAGTCAATGAAATg  <  2:439547/68‑1 (MQ=255)
                                                     |                                                                   
AGGTCAGCCGCTGTCTCTGCCGGTGCATGTGGCTGATGCTTTCCGCGCGGTACTGCTTGATGAGAAGATTGATCCAGCGCTGGCGGCAGAAATCCTGACGCTGCCTTCTGTCAATGAAATG  >  NC_000913/992376‑992496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.