| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 243009 | 17 (0.660) | 4 (0.170) | 4/118 | 1.9 | 16.6% | coding (295/2445 nt) | fadE | acyl coenzyme A dehydrogenase |
| ? | NC_000913 | = 243192 | 25 (1.080) | coding (112/2445 nt) | fadE | acyl coenzyme A dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACC > NC_000913/242943‑243070 | tCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTcc < 1:883696/68‑1 (MQ=255)gcAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTAGCCCTGGAACAAGTCGCCCTcc < 1:356004/67‑1 (MQ=255) cAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTccc < 2:953966/68‑1 (MQ=255) ggCGCGTCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGTCTTGCCCTGGAACAAGTCGCCCTCccac < 2:444056/68‑1 (MQ=255) gcgGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAg > 1:319294/1‑68 (MQ=255) tGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAggtggt < 2:816379/68‑1 (MQ=255) cgCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAggtggt < 2:899062/67‑1 (MQ=255) ggATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAGCGAGTCGCCCTCCCACCAGGTGGTGcc > 2:356540/1‑68 (MQ=255) ggATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctg > 2:145110‑M1/1‑53 (MQ=255) tATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCa > 2:413468/1‑68 (MQ=255) aTGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggc > 2:632309‑M1/1‑45 (MQ=255) aTGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCaa < 2:448989/68‑1 (MQ=255) agatttttCCAGTCCGGCTTGCCCTGGAACAAGACGCCCTCCCACCAGGTGGTGCCAGCATCAATCGc > 1:652039/4‑68 (MQ=255) cTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGctt < 1:607302/68‑1 (MQ=255) cTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGctt < 2:765186/68‑1 (MQ=255) gTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcc > 1:726771‑M1/1‑30 (MQ=255) cGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTgc < 1:302435/68‑1 (MQ=255) ttGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggcc > 2:631327‑M1/1‑23 (MQ=255) ttGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGa < 2:771272/68‑1 (MQ=255) ttGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCAGCATCAATCGCTTCTTTCTCAGTGCGCGa > 2:457997/1‑68 (MQ=255) aCAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCATCTTTCTCAGTGCGCGACATCggcggc > 2:874088/1‑68 (MQ=255) cGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccat > 1:953841‑M1/1‑7 (MQ=255) cGCCCTCggcgttgctggtcggtggtcggcgtgggtactggtgcctctggccattatcctcgtgccat < 2:902164‑M1/68‑62 (MQ=255) | TCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACC > NC_000913/242943‑243070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |