| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3275581 = | 13 (0.500) | 3 (0.140) | 3/112 | 2.1 | 16.7% | coding (300/1572 nt) | garD | D‑galactarate dehydrogenase |
| ? | NC_000913 | 3275672 = | 19 (0.870) | coding (391/1572 nt) | garD | D‑galactarate dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACCCTTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGT > NC_000913/3275610‑3275739 | aaCCCTTACCGCCGCTTGAAGGATACACCTTTGAGGGCTATCGCTATGCCGTTTGCAGCGTGGGCAcc < 2:726816/68‑1 (MQ=255)aaCCCTTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCAcc < 2:214386/68‑1 (MQ=255) ttACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCaaaaa > 1:2373/1‑68 (MQ=255) gcTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCg < 2:481816/68‑1 (MQ=255) gcTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCg < 2:257446/68‑1 (MQ=255) tGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGt < 1:906707/68‑1 (MQ=255) ggAAGGATACACCTTTGAGGGCGATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTa < 1:920169/68‑1 (MQ=255) cagcggcggtaagggttccgggactttggttgccagtggcagcgtgGGCACCAAAAACCTGCTCGGTa > 2:649235‑M2/47‑68 (MQ=255) aaGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATc > 2:317244/1‑68 (MQ=255) gATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATcacc < 1:883086/68‑1 (MQ=255) acacCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCaccacc > 1:469853/1‑68 (MQ=255) acCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAg < 1:195649/68‑1 (MQ=255) acCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAg < 1:463571/68‑1 (MQ=255) ccTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGc > 2:306831/1‑68 (MQ=255) ccTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGc > 2:46217/1‑68 (MQ=255) gggCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACt > 2:393829/1‑68 (MQ=255) ggactttggttgccagtggcagcgtgGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACtgt > 2:835769‑M2/27‑68 (MQ=255) gCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACtgt > 1:561538/1‑68 (MQ=255) gactttggttgccgatggcagcgtgGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACtgtg > 2:693532‑M2/26‑68 (MQ=255) cTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACtgtg > 2:730125/1‑68 (MQ=255) gCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCa > 1:173528/1‑68 (MQ=255) gCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCgt > 1:69423/1‑68 (MQ=255) tggcagcgtgGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGtggtgg < 1:835772‑M2/58‑1 (MQ=255) cggcagcgtgGGCACCAAAACCCTGCTCGGTATCACCACCTGCGTCCACTGTGTGGCAGGCGtggtgg < 2:900998‑M2/58‑1 (MQ=255) cggcagcgtgGGCACCAAAAACCTGCTCTGTATCACCACCAGCGTCCACTGTGTGGCAGGCGttgtgg < 1:220498‑M2/58‑1 (MQ=255) tgGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTa < 2:890425‑M2/66‑1 (MQ=255) ggCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATgtagt < 1:266755/68‑1 (MQ=255) | AACCCTTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGT > NC_000913/3275610‑3275739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |