| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 2 (0.080) | 17 (0.870) | 11/100 | 0.4 | 90.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 2 (0.100) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
GGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTT > NC_000913/1209552‑1209681 | gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:79323‑M2/1‑1 (MQ=255)gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac > 1:89645‑M2/68‑68 (MQ=255)gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:166608‑M2/1‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt > 1:716228‑M2/66‑68 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg > 1:522512‑M2/61‑68 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg > 1:559532‑M2/61‑68 (MQ=255) accggtgcgtcctagtgtagccgttgctgcattgagttttgctccttctcccaaaccagCGTATATGa > 2:271449‑M2/60‑68 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 2:959556‑M2/60‑68 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 2:382300‑M2/60‑68 (MQ=255) tgtagccgttgctgcattgagtgttgctccttctcccaagccaaCGTTTATGAAAATGAAGAAATAAc > 2:363405‑M2/45‑68 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 2:888533‑M2/44‑68 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 2:364059‑M2/44‑68 (MQ=255) cgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAagcta > 1:760305‑M2/39‑66 (MQ=255) ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 2:774351‑M2/35‑1 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca < 2:278217/68‑1 (MQ=255) gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 2:779485‑M2/25‑68 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc > 1:791000‑M2/23‑68 (MQ=255) tttgctccttctcccaaaccaaCGTATATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:413091‑M2/46‑1 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa > 2:763506/1‑68 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 2:444747‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 2:522512‑M2/60‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt < 1:888536‑M2/63‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 2:857200‑M2/6‑68 (MQ=255) | GGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTT > NC_000913/1209552‑1209681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |