| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 28 [0] | [0] 28 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 26 (1.150) | 13/116 | 0.4 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCA > NC_000913/258619‑258745 | ttgacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:164776‑M2/3‑1 (MQ=255)ttgacaccagaagagctgattgatcaaataaattaccgctctaggcccgtatattcgtgaaggttAGt < 2:848065‑M2/3‑1 (MQ=255)tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:777719‑M2/3‑1 (MQ=255)tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 2:846373‑M2/3‑1 (MQ=255)tggacacccgaagagcagattgagcaaaaaatataccgcactaggcccgtacattcgtgaaggtaAGt < 2:409578‑M2/3‑1 (MQ=255) gggcacccgaagagcagattgatcaaaaaatttaccgcgctaggcccgtatattcgtgaaggtaAGTg > 2:646710‑M2/65‑68 (MQ=255) ggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 2:769339‑M2/4‑1 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg > 2:320320‑M2/53‑68 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt < 1:583057‑M2/22‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt < 2:435934‑M2/22‑1 (MQ=255) taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:300053‑M2/36‑1 (MQ=255) gcactaggcccgtttattcgtgaaggcaAGTGCAAAGATAATCGATTCTTTATCGACTGTCTGGCTGt < 2:345253‑M2/40‑1 (MQ=255) gcactaggcccgtatattcgtgaaggtaAGTGCTAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 2:326118‑M2/40‑1 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc < 1:441855‑M2/44‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGA‑TCTTTTTCGATTGTCTGGCTGTATGCGTCaa > 1:110236‑M2/21‑68 (MQ=255) cccgtataatcgtgaaggtaAGTGCAAAGATAATCGA‑TCTTTTTCGAATGTCTGGCTGTATGCGTCaa > 1:110237‑M2/21‑68 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc > 1:862387‑M2/19‑68 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc < 2:377417‑M2/50‑1 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACg < 1:615548‑M2/51‑1 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc > 2:718621‑M2/11‑68 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc > 2:897814‑M2/11‑68 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc > 2:269139‑M2/11‑68 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc > 2:26639‑M2/11‑68 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc > 1:288010‑M2/11‑68 (MQ=255) cgtgaaggtaAGTGAAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGAGTAAACGtgaaaac > 1:427380‑M2/11‑66 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCg > 2:398651‑M2/10‑68 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg > 1:367106‑M2/9‑68 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa < 1:897817‑M2/62‑1 (MQ=255) | ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCA > NC_000913/258619‑258745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |