| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503–1979270 | 1979278 | 9–776 | 28 [0] | [0] 26 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 21 (0.930) | 14/116 | 0.3 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG > NC_000913/1979212‑1979344 | ggggtctgcgattttcaataatgcttgatgcagatcacacaaaacactcaattacttaacataaatgt < 2:66528‑M2/1‑1 (MQ=255)gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt < 1:223631‑M2/1‑1 (MQ=255)gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt < 2:122018‑M2/1‑1 (MQ=255) cgcgattttcaataatgcgtgatgcagatcacacaaatcactcaattacttaacataaatgTATAAGt < 2:897946‑M2/7‑1 (MQ=255) gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt < 1:60849‑M2/10‑1 (MQ=255) gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt < 1:89286‑M2/10‑1 (MQ=255) tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt < 1:339573‑M2/13‑1 (MQ=255) tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt < 2:367831‑M2/13‑1 (MQ=255) ataatgcgtgatgcagatcacactaaacactcaattacttaacttaaatgTATAAGTCATACttttgt > 1:896122‑M2/51‑68 (MQ=255) ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt > 1:597609‑M2/51‑68 (MQ=255) cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg < 1:945372‑M2/24‑1 (MQ=255) gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt < 1:317957‑M2/25‑1 (MQ=255) gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtgt < 2:627353‑M2/27‑1 (MQ=255) gatgcagatcacacaaaacactcaattacttaacataaaagTATAAGTCATACTTTTGTTTTGGgtgt < 1:826584‑M2/27‑1 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt > 1:115588‑M2/34‑68 (MQ=255) cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc < 1:372089‑M2/36‑1 (MQ=255) acaaaacactcaattacttaagataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt < 1:631676‑M2/39‑1 (MQ=255) aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaa > 1:498691‑M2/27‑68 (MQ=255) acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa > 1:744602‑M2/25‑68 (MQ=255) ttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTTAAAAGTATTTc > 2:196907‑M2/17‑68 (MQ=255) ttacttaacataaaggTATAAGTCCTACATTAGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc > 2:873598‑M2/17‑68 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta > 2:625512‑M2/8‑68 (MQ=255) tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAATAAGTTTTTCGCTACGCTagcaag > 2:591278‑M2/3‑68 (MQ=255) tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag > 1:954406‑M2/3‑68 (MQ=255) tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag > 1:826888‑M2/3‑68 (MQ=255) tgTATAAGTAATGCTGTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGATACGctagcagg > 2:891878‑M2/3‑66 (MQ=255) | CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG > NC_000913/1979212‑1979344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |