| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,606,094 | 0 | G | C | 53.8% | 2.8 / 16.6 | 13 | noncoding (72/87 nt) | leuV | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base G (5/1); new base C (0/7); total (5/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.66e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.13e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCG > NC_000913/4606030‑4606142 | aTCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACt > 2:968111/1‑68 (MQ=255) tCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACtt > 2:482519/1‑68 (MQ=255) aaaaTCAAGGAAGAAGCAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGCGGGGACTTGAACCCCCAc > 2:510768/1‑68 (MQ=255) cAAGGAATAAACAAGAAAGGAAGTAAAGATAATTTGTGCGAGGGGGGTCACTTGAACCCCCACGTCCg < 1:460630/68‑1 (MQ=25) cgaaACAAGAACGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGa < 2:828182/67‑1 (MQ=255) agaaACATCAAAGGAAGTAAAGAAAATTGGTGCGAGGGGGGGCACTTGAACCCCCACGTCCGTAAGGa < 1:568659/68‑1 (MQ=18) agaaACAAGAAAGGAAGTAAAGATAATTGGTGCGCGGGGGGCCACTTGAACCCCCACGTCCGTAAGGa < 2:860214/68‑1 (MQ=25) acacacGAAAGTAACCAAAGATAATTGGTGCGAGGGGGCCCACTTGAACCCCCACGTCCGTAAGGaca < 1:377444/66‑1 (MQ=17) aCAAGAAAGTAAGTAAAGATAATTGGCGCGAGGGGGGCCACTTGAACCCCCACGTCCGTAAGGACACt < 1:339215/68‑1 (MQ=18) gAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAaca > 1:542867/1‑68 (MQ=255) aGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCt > 2:126540/1‑68 (MQ=255) gATATTTGGTGCGAGGGGGGGCACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAgcg < 2:723658/68‑1 (MQ=255) caaTTGCTGCGAGGGGTGCCACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGcgcg < 2:659797/67‑1 (MQ=11) | ATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCG > NC_000913/4606030‑4606142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |