breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007779_cfb	1,097,580	0	C	T	38.9%	2.2 / 13.1	18	intergenic (+329/+226)	ycdU/serX	inner membrane protein/tRNA‑Ser
*	NC_007779_cfb	1,437,441	0	G	A	20.0%	119.7 / 12.1	65	intergenic (‑108/+33)	uspF/ompN	stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779_cfb	4310363 =	NA (NA)	77 (0.620)	46/436	3.7	93.9%	intergenic (‑287/‑68)	yjcS/insH_15	alkyl sulfatase/IS5 element protein
	?	NC_007779_cfb	= 4540919	5 (0.040)					intergenic (+208/+375)	yjhR/nanS	frameshift suppressor/hypothetical protein
*	?	NC_007779_cfb	4547362 =	72 (0.580)	15 (0.130)	14/418	10.1	16.4%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin
	?	NC_007779_cfb	4547676 =	84 (0.700)					intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin
*	?	NC_007779_cfb	= 4547370	72 (0.580)	7 (0.060)	7/418	13.1	8.4%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin
	?	NC_007779_cfb	= 4547666	84 (0.700)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin
*	?	NC_007779_cfb	= 2069490	126 (1.010)	49 (0.390)	4/436	15.3	42.8%	intergenic (‑32/+1599)	insH/insD_4	IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB'
	?	NC_007779_cfb	= 4540919	5 (0.040)					intergenic (+208/+375)	yjhR/nanS	frameshift suppressor/hypothetical protein