mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779_cfb | 1,097,580 | 0 | C | T | 36.0% | 13.7 / 17.3 | 25 | intergenic (+329/+226) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779_cfb | 1,097,540 | 0 | C | A | 30.8% | 29.6 / 17.7 | 26 | intergenic (+289/+266) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779_cfb | = 4310362 | 0 (0.000) | 49 (0.460) | 41/428 | 3.2 | 100% | intergenic (‑286/‑69) | yjcS/insH_15 | alkyl sulfatase/IS5 element protein |
| ? | NC_007779_cfb | 4311562 = | 0 (0.000) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
| * | ? | NC_007779_cfb | 4310363 = | NA (NA) | 60 (0.560) | 38/436 | 3.7 | 98.4% | intergenic (‑287/‑68) | yjcS/insH_15 | alkyl sulfatase/IS5 element protein |
| ? | NC_007779_cfb | = 4540919 | 1 (0.010) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | 4547362 = | 60 (0.560) | 15 (0.150) | 15/418 | 8.1 | 14.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779_cfb | 4547676 = | 117 (1.130) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779_cfb | = 4547370 | 66 (0.610) | 7 (0.070) | 7/418 | 11.3 | 7.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779_cfb | = 4547666 | 116 (1.120) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779_cfb | 967452 = | 129 (1.200) | 4 (0.040) | 3/416 | 13.7 | 3.2% | coding (410/1749 nt) | msbA | lipid ABC transporter ATP‑bindingprotein/membrane protein |
| ? | NC_007779_cfb | = 967448 | 119 (1.160) | coding (406/1749 nt) | msbA | lipid ABC transporter ATP‑bindingprotein/membrane protein | |||||
| * | ? | NC_007779_cfb | = 2069490 | 141 (1.310) | 40 (0.370) | 3/436 | 14.0 | 36.0% | intergenic (‑32/+1599) | insH/insD_4 | IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB' |
| ? | NC_007779_cfb | = 4540919 | 1 (0.010) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||