mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779_cfb | 1,097,580 | 0 | C | T | 57.9% | 4.5 / 11.7 | 19 | intergenic (+329/+226) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779_cfb | 1,097,540 | 0 | C | A | 41.7% | 6.5 / 23.7 | 25 | intergenic (+289/+266) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779_cfb | 4310363 = | NA (NA) | 78 (0.660) | 43/438 | 3.8 | 100% | intergenic (‑287/‑68) | yjcS/insH_15 | alkyl sulfatase/IS5 element protein |
| ? | NC_007779_cfb | = 4540919 | 0 (0.000) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | 4547362 = | 67 (0.560) | 6 (0.050) | 6/420 | 13.3 | 7.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779_cfb | 4547676 = | 94 (0.830) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779_cfb | 1298936 = | 127 (1.070) | 5 (0.040) | 5/416 | 13.8 | 3.9% | coding (763/2676 nt) | adhE | bifunctional acetaldehyde‑CoA dehydrogenase andiron‑dependent alcohol dehydrogenase and pyruvate‑formatelyase deactivase |
| ? | NC_007779_cfb | = 1298932 | 124 (1.100) | coding (767/2676 nt) | adhE | bifunctional acetaldehyde‑CoA dehydrogenase andiron‑dependent alcohol dehydrogenase and pyruvate‑formatelyase deactivase | |||||
| * | ? | NC_007779_cfb | 3406257 = | 143 (1.200) | 4 (0.040) | 4/414 | 14.5 | 2.8% | coding (486/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylasesubunit |
| ? | NC_007779_cfb | = 3406253 | 140 (1.250) | coding (482/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylasesubunit | |||||
| * | ? | NC_007779_cfb | = 2069490 | 154 (1.300) | 50 (0.420) | 4/438 | 14.9 | 39.4% | intergenic (‑32/+1599) | insH/insD_4 | IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB' |
| ? | NC_007779_cfb | = 4540919 | 0 (0.000) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | 1390731 = | 131 (1.100) | 3 (0.030) | 3/422 | 15.4 | 2.3% | coding (88/966 nt) | ycjG | L‑Ala‑D/L‑Glu epimerase |
| ? | NC_007779_cfb | = 1390727 | 127 (1.110) | coding (84/966 nt) | ycjG | L‑Ala‑D/L‑Glu epimerase | |||||