breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007779_cfb	3,596,073	0	A	G	21.9%	138.7 / 31.4	83	noncoding (92/120 nt)	rrfA	5S ribosomal RNA
*	NC_007779_cfb	3,596,020	0	C	T	21.4%	83.6 / 20.9	56	intergenic (+245/+25)	mobB/rrfA	molybdopterin‑guanine dinucleotide biosynthesisprotein B/5S ribosomal RNA

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779_cfb	4310363 =	NA (NA)	50 (0.630)	27/438	3.2	94.3%	intergenic (‑287/‑68)	yjcS/insH_15	alkyl sulfatase/IS5 element protein
	?	NC_007779_cfb	= 4540919	3 (0.040)					intergenic (+208/+375)	yjhR/nanS	frameshift suppressor/hypothetical protein
*	?	NC_007779_cfb	= 4547370	80 (1.000)	4 (0.050)	4/420	9.6	5.5%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin
	?	NC_007779_cfb	= 4547666	62 (0.810)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin
*	?	NC_007779_cfb	= 2069490	90 (1.130)	26 (0.330)	3/438	10.5	35.9%	intergenic (‑32/+1599)	insH/insD_4	IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB'
	?	NC_007779_cfb	= 4540919	3 (0.040)					intergenic (+208/+375)	yjhR/nanS	frameshift suppressor/hypothetical protein