breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007779_cfb	1,097,580	0	C	T	40.0%	4.7 / 14.8	20	intergenic (+329/+226)	ycdU/serX	inner membrane protein/tRNA‑Ser
*	NC_007779_cfb	1,097,540	0	C	A	33.3%	21.2 / 11.8	21	intergenic (+289/+266)	ycdU/serX	inner membrane protein/tRNA‑Ser
*	NC_007779_cfb	2,004,055	0	A	C	28.6%	88.0 / 16.3	49	intergenic (‑129/+192)	fliA/fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779_cfb	4310363 =	NA (NA)	53 (0.450)	45/432	3.4	93.0%	intergenic (‑287/‑68)	yjcS/insH_15	alkyl sulfatase/IS5 element protein
	?	NC_007779_cfb	= 4540919	4 (0.030)					intergenic (+208/+375)	yjhR/nanS	frameshift suppressor/hypothetical protein
*	?	NC_007779_cfb	= 2069490	148 (1.260)	49 (0.420)	5/432	13.9	39.2%	intergenic (‑32/+1599)	insH/insD_4	IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB'
	?	NC_007779_cfb	= 4540919	4 (0.030)					intergenic (+208/+375)	yjhR/nanS	frameshift suppressor/hypothetical protein
*	?	NC_007779_cfb	3399030 =	120 (1.020)	3 (0.030)	3/414	15.0	2.5%	coding (804/1104 nt)	mreC	cell wall structural complex MreBCDtransmembrane component MreC
	?	NC_007779_cfb	= 3399026	116 (1.030)					coding (808/1104 nt)	mreC	cell wall structural complex MreBCDtransmembrane component MreC
*	?	NC_007779_cfb	407457 =	122 (1.040)	3 (0.030)	3/416	15.1	2.5%	coding (57/285 nt)	yaiE	hypothetical protein
	?	NC_007779_cfb	= 407453	118 (1.050)					coding (53/285 nt)	yaiE	hypothetical protein