| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 1,097,540 | 0 | C | A | 26.9% | 116.0 / 22.3 | 52 | intergenic (+289/+85) | Y75_RS05375/Y75_RS05385 | hypothetical protein/RtT sRNA |
| Reads supporting (aligned to +/- strand): ref base C (2/36); new base A (0/14); total (2/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTAC > NC_007779/1097294‑1097788 | aCTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTTACTCTGTTAGCTCGCCCTCCCGGGCA‑‑CCAGCTCACCGCGGTTTCGGGCTGTCCCACCTGCCGTCGCCG‑CTTGTTG‑Ccccc > 2:936627/1‑250 (MQ=21)aCTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCACGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑Acccc < 1:99616/250‑1 (MQ=255) tGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCgg < 2:651789/250‑1 (MQ=255) gATTGTGGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCAt < 2:403894/250‑1 (MQ=255) tgttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTGACTCGCCTCGCTCGCCCT‑GCGGGCGG‑CCCCCCCACTGCGTTCACGGGCTTTCCAACTGGCGTGCGCCACGTTG‑CG‑GCCCCCCGCCGGGGCCTCCCGTccc > 2:732800/1‑250 (MQ=18) tgttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATccc < 1:425291/250‑1 (MQ=255) gACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATac < 1:166746/250‑1 (MQ=255) aCAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATaca < 1:122028/250‑1 (MQ=255) gTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGa < 1:634285/250‑1 (MQ=255) cACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTATATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaaaaac > 1:566817/1‑248 (MQ=255) cGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTTAAGCGCCTCGCTCGCCCC‑CGGGGGAG‑CCCGCTGACTGCGTTCGCGGTCTGTCCAACTTGCTGTCGCCA‑GTTGTCG‑GCCCCCCGTCGGGGGTTCTCATCCCCCCCGTGTGTGGGATACTCAaacaaaaaacac > 2:726581/1‑246 (MQ=17) gATTGCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCg < 2:354223/250‑1 (MQ=255) aTTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGt < 1:732800/250‑1 (MQ=255) cgtCGCCCGAACAGAGGTGGGCGGGGGCACCCTGTGTGTGCAATATACGAAAAAAAAGACCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCGTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACTGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACACCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTc < 2:248107/248‑1 (MQ=255) ccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTc < 1:550273/250‑1 (MQ=255) ccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTc < 1:205987/250‑1 (MQ=255) cTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCg < 1:790641/250‑1 (MQ=255) tAACAGACGTGGGCGGGGGCTCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGc < 1:94381/250‑1 (MQ=255) gACGGGGGCGCGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTATTCTTTAAAGATGGCGGTGAGGGGGGGATTGACTCGCTCCGCTCGCCCT‑GCCGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCtcttc < 2:119659/250‑1 (MQ=255) cGTGGGGGGGGGCTCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTGCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt < 2:19504/250‑1 (MQ=255) cGTGGGCGGGGGCCGCCGGTGTGTGCAAGATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTACTGTAAAGAGGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt < 2:434355/250‑1 (MQ=255) gcggtgggggCACGCGGTGTGTACAATATACGAACATAAGGCCGGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAT‑CTCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCAGGTCGGGTCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTa < 2:685166/245‑1 (MQ=11) cAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGAtt < 1:951001/250‑1 (MQ=33) aaagataCGAAAAAAAGGCGGGTGCTTTCGTACAAGCGAGGATGTGAATGGGGCGGTGCGGGTGGGACAGACTCGCTTCGCACGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTACACGGTCTGTCCAACTGGCTGTCGACT‑GTTGTCG‑ACCCCAGGACGCGGCTTCTCGTCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGAtt < 2:38872/246‑1 (MQ=11) atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTTACTCGCCTCGCTCGCCCT‑GCGGGGAG‑CCCGCGCACTGGGGTTACGGGCTGTTCCACTGGGTGTCGCCC‑GTTGTCGCACCCCCGG‑CGGGGCTTCTCCTCCCCCCCGGTTGGGGAATATACCAAAAAAAAAAACGGACCTTTCTACCAGCTCTTCTTTTTATATGGCCGggg‑gggggggggggg > 2:711962/1‑245 (MQ=2) aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTtcgctcg < 1:923998/250‑1 (MQ=18) cggTACTTTCGTACGAGACCTTGCTTAAACATGGCGGGGCGGGGGAGATTGACTCGCTCTGTTCGCCCT‑GCGGGCAG‑TCGGCTCACTGCGTTGACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCC‑ACCCCAGGGCGGGGCTTCTCAGCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCt < 2:588555/248‑1 (MQ=11) aCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTAATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg < 1:582263/250‑1 (MQ=255) tCGTACGAGCTCTTGTGTAAATAGGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCG‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAg < 1:311139/250‑1 (MQ=255) tACGAGCTCTTCTTTAAATATTGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGccc < 1:262842/250‑1 (MQ=255) gcttcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt < 1:18978/249‑1 (MQ=255) cttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGt < 1:107973/250‑1 (MQ=255) ttAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTc < 1:925028/250‑1 (MQ=255) ttAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTc < 1:546565/250‑1 (MQ=255) aaTATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg < 1:115632/250‑1 (MQ=255) ggggTGAGGGGGGGATTGACTTGTTCTGCTCGCCCT‑TC‑GGCAGTGCGGCTCCCTGCGTTCTCGGTCTGTCCTACTGGCGGGCGCCA‑GTCGTCG‑ACCCCAGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGt < 2:933174/248‑1 (MQ=17) cGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc < 1:519239/250‑1 (MQ=255) gTGCGGGTGTGATTGACTCGTTCCGTTCGCTCT‑GGGGCCAG‑CCCGCTCTCTGCGTTCAAGGTCGGTCCATCTGGTGGTCGCCA‑GTTGCCG‑ACCCCAGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCa < 2:708801/250‑1 (MQ=17) tGAGGGGGGGATTGACTCGCTCTGCTCGCCCC‑GCGGGCAG‑CCCCCTCACTGCCTTCCCCGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCC‑GCCCCCGGTCGGGTCGTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCaa < 2:566817/250‑1 (MQ=18) gAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc < 1:854376/250‑1 (MQ=255) caggggagACTGACTCGCTCGGCTCGCGCT‑GCCGGCAG‑CTCGCTCTCTGCGGTGTCGGTAGGTCGAACTGGCGGTCGACA‑GCTGTCG‑ACCCCAGGTGGCGGCTGCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACt < 2:635285/248‑1 (MQ=17) cTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGtt < 1:656292/250‑1 (MQ=255) ctcgcCCT‑GCGGGCAG‑CCCGCTCACTGGGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAcc < 1:158319/250‑1 (MQ=255) tcgcCCT‑GCGTGCAG‑CCCGCTCTCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAccc < 1:936627/250‑1 (MQ=255) tcgcCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAccc < 1:63182/250‑1 (MQ=255) gcCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCg < 1:637586/250‑1 (MQ=255) cccT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCgg < 1:43373/250‑1 (MQ=255) gCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCgg > 2:588990/1‑87 (MQ=33) gCAG‑CCCGCTCACTGCGTTCACGGTCGGTACAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCt < 1:228882/250‑1 (MQ=255) gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATc < 1:449001/250‑1 (MQ=255) gcTGCGTTGCCGGGCGGTCCCGCTGGGTGTCAGCA‑GTTGCCC‑GACCCAGGTCGGGGCTTCTCGTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATccccc < 2:745297/249‑1 (MQ=14) cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATcccccc < 1:552331/250‑1 (MQ=255) cGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgt < 1:156186/250‑1 (MQ=255) tCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtgtg < 1:992521/250‑1 (MQ=255) cACGGGCTGTCCATCTGGCTGTCGCCA‑GGTGGCG‑CCCCCCGGTCGGGGCTTCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtgtg < 1:94740/250‑1 (MQ=255) cgtccgatgtGGCTGTCGCCC‑GCCCCCC‑ACCCCAGGTCGGGGCGTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAata < 2:283039/241‑1 (MQ=14) tCCAACTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATAc < 1:448417/250‑1 (MQ=255) cccATCTGGCTGTCGCTT‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATAc < 1:105673/249‑1 (MQ=255) cAACGGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGa < 1:59654/250‑1 (MQ=255) aCTGGCTGTCGCCA‑GTTGTCG‑AACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGaaa < 1:731424/250‑1 (MQ=255) tGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGaaaaa < 1:506257/250‑1 (MQ=255) ggCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGaaaaaa < 1:37463/250‑1 (MQ=255) gCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGaaaaaaa < 1:505016/250‑1 (MQ=255) gacgacA‑GCTGTCG‑ACCCTAGCTGGGGGCGGCTGCTCCACCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTGCGAGCTCTTCTTGAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGc < 2:843413/245‑1 (MQ=11) cgcctttcctCG‑GCCCCCTGTCGGGGGTTCTCGTCCCCCCGGTTTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGccc < 2:662861/241‑1 (MQ=255) a‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTAc < 1:178054/250‑1 (MQ=255) gTCG‑CCCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTc < 1:684790/250‑1 (MQ=255) gTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTc < 1:1024014/250‑1 (MQ=255) g‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTa < 1:520193/250‑1 (MQ=255) aCCCCCGGTCGGGGCTTCTCCTCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTAc < 1:692706/250‑1 (MQ=255) | ACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT‑GCGGGCAG‑CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA‑GTTGTCG‑ACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTAC > NC_007779/1097294‑1097788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |