New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	438444 =	8 (0.070)	50 (0.440)	48/478	3.9	84.2%	coding (958/1863 nt)	dxs	1‑deoxy‑D‑xylulose‑5‑phosphate synthase
	?	NC_007779	= 438464	11 (0.100)					coding (938/1863 nt)	dxs	1‑deoxy‑D‑xylulose‑5‑phosphate synthase
Rejected: Coverage evenness skew score above cutoff.

GCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACCGCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGCCTTTAATATGTTC  >  NC_007779/438233‑438711                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                        gcgACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACCGCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCtac                                                                                                                                                                                                                                       >  2:64941/1‑248 (MQ=255)     cAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACCGCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCtactttt                                                                                                                                                                                                                                   >  1:246724/1‑244 (MQ=255)           gTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACCGCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCtacttttcggcaa                                                                                                                                                                                                                             >  1:913151/1‑238 (MQ=255)                                                                                     cGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCAGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGGTCGGGGCTTTTTCTGCCGGTTCATAAccgc                                                                                                                                                                        >  2:429201/1‑248 (MQ=255)                                                                                                 ttACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCAGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTgg                                                                                                                                                            >  2:816863/1‑250 (MQ=255)                                                                                                               gACCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAgg                                                                                                                                              >  2:263183/1‑250 (MQ=255)                                                                                                                aCCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGTAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTTGTCATGATATGCAGGa                                                                                                                                             >  1:222975/1‑250 (MQ=255)                                                                                                                      ccGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCg                                                                                                                                       >  1:366329/1‑250 (MQ=255)                                                                                                                          aaCCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGcc                                                                                                                                   >  1:584929/1‑250 (MQ=255)                                                                                                                           aCCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCt                                                                                                                                  >  1:384099/1‑250 (MQ=255)                                                                                                                                 aCGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAgg                                                                                                                            >  1:7830/1‑250 (MQ=255)                                                                                                                                  cGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGt                                                                                                                           >  1:572537/1‑250 (MQ=255)                                                                                                                                     aTCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTcgc                                                                                                                        >  1:415333/1‑250 (MQ=255)                                                                                                                                       cGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCgcgc                                                                                                                      >  1:1017655/1‑250 (MQ=255)                                                                                                                                        gCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCACGCa                                                                                                                     >  2:547437/1‑250 (MQ=255)                                                                                                                                                aaTCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGCTCGGCAAACCGCCGCTACTTTTCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCttt                                                                                                             >  1:891964/1‑250 (MQ=255)                                                                                                                                                                                                                              gccgctacttttCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTg                               >  1:679747/12‑250 (MQ=255)                                                                                                                                                                                                                              gccgctacttttCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTg                               <  1:602108/239‑1 (MQ=255)                                                                                                                                                                                                                                  ctacttttCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAg                           >  2:194154/8‑250 (MQ=255)                                                                                                                                                                                                                                  caccttttCGGCAACCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAg                           <  1:85591/243‑1 (MQ=255)                                                                                                                                                                                                                                    acttttCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGc                         >  1:589761/6‑250 (MQ=255)                                                                                                                                                                                                                                     ctttgccgccgaCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCa                        <  2:15263/239‑1 (MQ=255)                                                                                                                                                                                                                                        ttCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTa                     >  1:1028589/2‑250 (MQ=255)                                                                                                                                                                                                                                           gacAACCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCa                  <  2:660805/248‑1 (MQ=255)                                                                                                                                                                                                                                            gCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCGTTCAGGTCGCGCATGGTCGTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGGCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCAt                 >  1:950293/1‑250 (MQ=255)                                                                                                                                                                                                                                             cAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATg                >  1:604298/1‑250 (MQ=255)                                                                                                                                                                                                                                               caCCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGcc              <  2:349693/249‑1 (MQ=255)                                                                                                                                                                                                                                                 ccgccgCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGCCtt            >  2:803543/1‑250 (MQ=255)                                                                                                                                                                                                                                                  cgccgcTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGCCttt           <  1:429201/250‑1 (MQ=255)                                                                                                                                                                                                                                                   gccgcTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGCCTTTa          >  2:13263/1‑250 (MQ=255)                                                                                                                                                                                                                                                       cTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGCCTTTAatat      <  2:1091742/250‑1 (MQ=255)                                                                                                                                                                                                                                                        tACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGCCTTTAATATg     <  2:415333/250‑1 (MQ=255)                                                                                                                                                                                                                                                           ttttCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGCCTTTAATATGttc  >  2:796889/1‑250 (MQ=255)                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                        GCGACAATGGGTTTGTACCCACCAATCGCCAGACCCGCAGCAAAGGTCACCGCGTGTTGCTCGGCAATTGCCACGTCGAAGTAGCGATCCGGGAATTTACGTGAAAACTCGACCATGCCGGAACCTTCACGCATCGCCGGAGTAATCGCCATCAGCTTGTTGTCTTTCGCTGCCGTTTCGCACAACCAGTCGCCAAAGATTTTTGAATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGGCAAACCGCCGCTACTTTTCGGCAAACAACCGCTGGAGGGATCAAATTTAGGCACGGCGTGGAAAGTGATCGGGTCTTTTTCTGCCGGTTCATAACCACGACCTTTTTTGGTCATGATATGCAGGAACTGCGGGCCTTTCAGGTCGCGCATGTTCTTTAGCGTGGTGATAAGCCCCAGCACATCGTGACCGTCCACCGGGCCGATGTAGTTAAAGCCCAGCTCTTCAAACAACGTGCCAGGCACTACCATGCCTTTAATATGTTC  >  NC_007779/438233‑438711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.