New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2083598 =	14 (0.920)	5 (0.330)	5/272	NT	27.0%	intergenic (+71/‑75)	hisL/hisG	his operon leader peptide/ATP phosphoribosyltransferase
	?	CP009273	3713993 =	13 (0.850)					intergenic (‑1/‑47)	mokA/insJ	pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS/IS150 transposase A

TAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGCAGAAATCCGGCCGTTTAAGTGATGACTCACGC  >  CP009273/2083456‑2083738                                                                                                                                               |                                                                                                                                             tAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGTTTGATTTTCTGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGAt                                                                                                                                        <  2:79351/149‑1 (MQ=255)          acaGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCg                                                                                                                               >  2:262161/1‑149 (MQ=255)          acaGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCATGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCAcc                                                                                                                                    >  1:44030/1‑144 (MQ=255)                                               accatcatcaccatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGAc                                                                                          <  2:161261/149‑1 (MQ=255)                                                attcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaGGAAGATCTCCTTCTGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACa                                                                                         >  2:131747‑M1/96‑149 (MQ=255)                                                   tcatcaccatcatcCTGACTAGTCTTTCCGGCGCACGCAACTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGt                                                                                      >  2:199204/1‑149 (MQ=255)                                                              atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGTAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCAGCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGAAGGGGTTAAag                                                                                >  1:174562/1‑144 (MQ=255)                                                                ccTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAagag                                                                              >  1:147107/1‑144 (MQ=255)                                                                            cggtatgttggctttgacatattaggggctatttcacttcgtcgtccaacaaaatgggtgcagtacaGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAGCAAAAt                                                                  >  1:57359‑M1/68‑144 (MQ=255)                                                                                 gCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGACCGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacag                                                             <  1:98573/144‑1 (MQ=255)                                                                                  cGATGGGTGTGGGAAGACATTCAGATCTTCCAGGTGTCCAAGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAAGgacaga                                                            <  1:72282/144‑1 (MQ=255)                                                                                        gtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAacac                                                      >  1:193939/1‑144 (MQ=255)                                                                                                  taggggcgattccatttcatcgtccaacaaaatgggtgcagtacaGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGc                                            >  1:20733‑M1/46‑144 (MQ=255)                                                                                                     ttCAGATCTTCCAGTGGTGCATGCACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGAAGACTTTATAATTGCGCAGTTGATAAAGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTAt                                    >  2:62731/1‑149 (MQ=255)                                                                                                             ttCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGATAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCCTAGCTATGCa                                 >  1:177629/1‑144 (MQ=255)                                                                                                                cAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGCAGaa                              <  1:251025/144‑1 (MQ=255)                                                                                                                    atcgtccaacaaaatgggtgcagtacaGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGCAGAAATcc                          <  1:196608‑M1/117‑1 (MQ=255)                                                                                                                              aaaatgggtgcagtacaGGAAGATCACCTTCCGGGGGTTTTTTTATTGCGCCGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCAAAGCAATGCAGAAATCCGGCCGTTTAAGtgat           >  2:99817‑M1/18‑149 (MQ=255)                                                                                                                                       aaGCCCCCGGAAGATCACCTTCCGTGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGCAGAAATCCGGCCGTTTAAGTGATGACTCAcgc  <  2:47804/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             TAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGCAGAAATCCGGCCGTTTAAGTGATGACTCACGC  >  CP009273/2083456‑2083738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.