New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2269338 =	10 (0.660)	3 (0.200)	3/272	NT	23.1%	coding (587/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	= 3577555	NA (NA)					intergenic (+15/‑1)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E

CTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGG  >  CP009273/2269199‑2269463                                                                                                                                            |                                                                                                                              gcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtgaagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtccttacccgcaa                                                                                                                           <  1:164960‑M1/5‑5 (MQ=255)   gACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTATGGGGACAACGCTGTATTGAAGTATGGTCGGGGATGCGGACGCTGTTTTTGGTTATTTTACTTTCCAGcgt                                                                                                                         >  1:132747/1‑144 (MQ=255)                                     gggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAAtt                                                                                       >  1:170429‑M1/104‑144 (MQ=255)                                                 gcgttttACGGTGGTAACTTCGCACTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGACGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGttt                                                                           <  1:25944/139‑1 (MQ=255)                                                    tATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCGTTAGTGGAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCGGCTGGCAATTACTGTCTTGTTTGGCTGGAt                                                                   <  2:134508/149‑1 (MQ=255)                                                        aCGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGa                                                                    >  1:194251/1‑144 (MQ=255)                                                                          tctGGGGACAACGCTTTATTGAAGTATGGTCGGGAATGCCAACGCTGATTTTGATAATATTACATTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTgcgg                                             >  2:258904/1‑149 (MQ=255)                                                                                              gAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTGCTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACgg                              >  1:20107/1‑143 (MQ=255)                                                                                                   aTGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCg                         >  1:189476/1‑144 (MQ=255)                                                                                                       gaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGa                >  2:110222‑M1/38‑149 (MQ=255)                                                                                                        aacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGAc               >  2:239528‑M1/37‑149 (MQ=255)                                                                                                                          ttttGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGCCTACAATCGTGCgg  >  1:98061/1‑144 (MQ=255)                                                                                                                          ttttGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACCTACTCGTAATTTCGACTACATTCGTGCgg  >  1:98065/1‑144 (MQ=255)                                                                                                                          ttttGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGGTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGATTTTACGTACCCGTAATTTCTCCTACATTCGTCCgg  >  1:19956/1‑144 (MQ=255)                                                                                                                                            |                                                                                                                              CTGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGG  >  CP009273/2269199‑2269463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.