New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1391495	NA (NA)	3 (0.200)	3/272	NT	25.0%	intergenic (+146/‑127)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein
	?	CP009273	= 2083419	9 (0.590)					intergenic (‑225/‑58)	yefM/hisL	antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide

AGACGAAAATCCAGGCTTCGCTATTTTTGGTGCCATCAGCTAAGAGGACAGTCCTCTTAGCCCCCTCCTTTCCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATATATAAAAAAGCCCTTGCTTTCTAACGTGAAAGTGGTTTAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTT  >  CP009273/2083286‑2083565                                                                                                                                      |                                                                                                                                                   ggacgacAACCCACGCTTCGCTATTTTTGGGTCCATCAGCGAAGAGGACAGTCCTCTTAGCCCCCTCCTTTCCCCGCTCATTTATTAAACAAATTTATTGTCATAAAATATATAAAAAAGCCCTTGCTTTCTAACGTGAAAGTGGTTTa                                                                                                                                     <  2:19960/148‑1 (MQ=255)         aTCCAGGCTTCGCTATTTTTGGTGCCATCAGCTAAGAGGACAGTCCTCATAACCCCCTCCTTTCCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATATATAAAAAAGCCCGTGCTTTCTAACGTGAAAGTGGTTTCGGTTaaaa                                                                                                                             >  2:79322/1‑149 (MQ=255)             aGGCTTCGCTATTTTTGGTGCCATCAGCTAAGAGGACAGTCCTCTTAGCCCCCTCCTTTCCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATATATAAAAAAGCCCTTGCTTTCTAAggaaggtgcgaataagcggggaaattc                                                                                                                         >  2:246473‑M2/1‑122 (MQ=255)                                         tAAGAGGACAGATGTCTTTGCTCCCTCCTTTCCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATATATAAAAAAGCCCTTGCTTTCTAACGTGAAAGTGGTTTAGGTTAAAAGACATCAGTTGGATAAACATTCACaga                                                                                                  >  1:145405/1‑144 (MQ=255)                                          aaGAGGACAGTCCTCTTAGCCCCCTCCTTTCCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATATATAAAAAAGCCATTGCTTTCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct                                                                                            <  2:104969‑M2/149‑57 (MQ=255)                                                             cccccTCCTTACCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATATATAAAAAAGCCCTTGCTTTCTAACGTGAAAGTGGTTTAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTTGATGACACGCGTTCAAttt                                                                         <  2:71399/149‑1 (MQ=255)                                                               cccTCCTTTCCCCGCTCATTCATTGAACAAATCCATTGCCATAAAATATATAAAAAAGCCCTTGCTTTCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                       <  2:202007‑M2/149‑78 (MQ=255)                                                                                       aaaCAAATCCATTGCCATAAAATATAGAAAAAAGCCCTTGCTTTCTAACGTGAAAGTGGTTGAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTGTATGACACGCGTTAAATTTAAACACcaccatcaaccccat                                                    >  1:218849/1‑144 (MQ=255)                                                                                                           aaTATATAAAAAAGCCGTTGCTTTCTAACGTGAAAGTGGTTTAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAg                                <  1:115083/144‑1 (MQ=255)                                                                                                           aaTATATAAAAAAGCCCTTGCTTTCTAACGTGAAAGTGGTTTAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGAt                           <  2:210268/149‑1 (MQ=255)                                                                                                              agacaaaaaaCCCCTTGCTTGCTAACGTCACAGTGGTTTAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCg                             <  1:72652/140‑1 (MQ=255)                                                                                                                                 ttCTAACGTGAAAGTGGTTTAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGAt     <  2:145580/149‑1 (MQ=255)                                                                                                                                    tAACGTGAAATTGGTTTAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTTTATGACACGTGTTCAATTTAAACACTACCATCATCACCATTTTCCTGACTAGTTTGTCAGGCGATGTGTGCTGGAAGACATTCAGATCtt  <  2:56131/149‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                   AGACGAAAATCCAGGCTTCGCTATTTTTGGTGCCATCAGCTAAGAGGACAGTCCTCTTAGCCCCCTCCTTTCCCCGCTCATTCATTAAACAAATCCATTGCCATAAAATATATAAAAAAGCCCTTGCTTTCTAACGTGAAAGTGGTTTAGGTTAAAAGACATCAGTTGAATAAACATTCACAGAGACTTTTATGACACGCGTTCAATTTAAACACCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTT  >  CP009273/2083286‑2083565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.