New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3338351 =	55 (1.350)	4 (0.110)	4/270	5.2	7.8%	coding (276/1434 nt)	rpoN	RNA polymerase, sigma 54 (sigma N) factor
	?	CP009273	3338383 =	44 (1.160)					coding (308/1434 nt)	rpoN	RNA polymerase, sigma 54 (sigma N) factor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATCCGCTGCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATT  >  CP009273/3338204‑3338495                                                                                                                                                     |                                                                                                                                                 tAATCCGCTGCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTaca                                                                                                                                                 >  2:686828/1‑149 (MQ=255) tAATCCACTGCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTaca                                                                                                                                                 >  2:280432/1‑149 (MQ=255)    tCCGCTGCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGAACGAAG‑AGAAATAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCg                                                                                                                                              >  2:164070/1‑149 (MQ=255)            ttGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGCAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTaca                                                                                                                                      <  2:503243/149‑1 (MQ=255)             tGAGCAAATCGACACTCATGAAGAAATCGACACCGGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTg                                                                                                                                           >  1:454341/1‑143 (MQ=255)                gCAAATCGACGCTCATGAAGAACTCGACCCCCGCGCAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTa                                                                                                                                        <  1:156371/143‑1 (MQ=255)                 cAAATCGACACTCATGAAGAAATCGGCACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGCCGCGCGCGAAC‑ACAAAGAGATGCCGGAAGAGCTGCCACTCGATGCAAGTTGGGACACCATATAAACCGCTGGtcc                                                                                                                                       >  1:8703/1‑141 (MQ=255)                 cAAATCGACACTCATGAAGAAATCGACACACGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACTCCATTTACACCGCTGGTACACCATc                                                                                                                                 >  2:427665/1‑149 (MQ=255)                  aaaTCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGACC‑ACACAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTaca                                                                                                                                      <  1:551466/143‑1 (MQ=255)                  aaaTCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTaca                                                                                                                                      <  1:405128/143‑1 (MQ=255)                    aTCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACAcc                                                                                                                                    >  1:491831/1‑143 (MQ=255)                       gACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTCCACAGCTGGTACACCATc                                                                                                                                 >  1:114306/1‑143 (MQ=255)                              aTGAAGACATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGt                                                                                                                    <  2:297399/149‑1 (MQ=255)                              aTGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCAcc                                                                                                                          >  1:90832/1‑143 (MQ=255)                              aTGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGt                                                                                                                    >  2:27811/1‑149 (MQ=255)                              aTGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGt                                                                                                                    <  2:344481/149‑1 (MQ=255)                              aTGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGt                                                                                                                    <  2:693562/149‑1 (MQ=255)                                gaagaaATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAg                                                                                                                        >  1:521513/1‑143 (MQ=255)                                  agaaATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGGACACCATCCGGCACCAGCg                                                                                                                      >  1:274246/1‑143 (MQ=255)                                  acaaaTCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGc                                                                                                                       <  1:563243/141‑1 (MQ=255)                                      aTCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACAt                                                                                                            <  2:123146/149‑1 (MQ=255)                                       tCGACCCCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCTGCAAGAGCCGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGAc                                                                                                                 <  1:39964/143‑1 (MQ=255)                                       tCGACACCCGCGAAACGCAAGACAGCGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGCAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGAc                                                                                                                 >  1:230778/1‑143 (MQ=255)                                             ccccCGAAACGCAAGNCAGNGNANCNCTGGACATCGACGATGCGCTCGAAG‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgacgac                                                                                                     <  2:478493/149‑1 (MQ=255)                                             cccGCGAAACGCAAGACAGTTAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgacgac                                                                                                     <  2:462338/149‑1 (MQ=255)                                                       gccaGACAGTGAAACGCTGGACACCGCCGCCGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCgg                                                                                           <  2:240052/146‑1 (MQ=255)                                                        cAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAggt                                                                                                >  1:373739/1‑141 (MQ=255)                                                         aaGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTc                                                                                         <  2:540427/149‑1 (MQ=255)                                                          aGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGc                                                                                              <  1:88670/143‑1 (MQ=255)                                                             cAGTGAAACGCTGGACACCGCCGACGCGCTCGGAC‑ACAAAGAGATGCCGGAAGGGCTGCCGCTCGATGCGAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCAGCCGCGGTGACTACATTGACGACGAGCTGCCGGTCTagc                                                                                     <  2:328290/149‑3 (MQ=255)                                                              aGTGCAACGCCGGACACCGGCGACGGGCCCGGGC‑GAAAAAAGATGCCGGAGCGTCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCa                                                                                    <  2:270494/149‑1 (MQ=255)                                                               gTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACATCATTTCAACCGCTTGTAGGTAGCTAAACACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAg                                                                                   <  2:342721/149‑1 (MQ=255)                                                                 gacaCGCTGGACACCGCCGACGCGCGCGAAC‑AAAACGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAggg                                                                                 <  2:220927/146‑1 (MQ=255)                                                                 gAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCAGGCACCAGCGGTGACTACATTGAGGACGAGCTGCCGGTCTACCCggg                                                                                 >  2:558215/1‑149 (MQ=255)                                                                               cgccgACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGa                                                                   >  2:454132/1‑149 (MQ=255)                                                                                   caCGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCtt                                                               <  2:49408/148‑1 (MQ=255)                                                                                    aCGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAg                                                                    >  1:532470/1‑143 (MQ=255)                                                                                     ggcgcTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCAGCTCGATGCCAGTTGGGAAACCATTTACACCGCTGGGCCACCATCCGGCACCAGCGGTGGCTACATTGACGCAGAGCTGCCGGTCTCCACGGGCGAAacggacaaca                                                                   >  1:112695/2‑136 (MQ=255)                                                                                       cgcTCGAAC‑AAGAAGAGAGGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCCACCAGGGCGAAACGACGCAGAcc                                                                 >  1:536686/1‑143 (MQ=255)                                                                                         cTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGa                                                         <  2:421906/149‑1 (MQ=255)                                                                                                         aTGCCGGAAGAGCTGCCGCTCGATGCACGTTGGGTCACCACTTACTCCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCa                                          <  2:306900/149‑1 (MQ=255)                                                                                                           gCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAgg                                        >  2:689252/1‑149 (MQ=255)                                                                                                               gAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCa                                          <  1:546974/143‑1 (MQ=255)                                                                                                                     cTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGac                              <  2:642810/149‑1 (MQ=255)                                                                                                                        ccGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCt                                 >  1:476893/1‑143 (MQ=255)                                                                                                                          gCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGCCGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGGCACCGt                         >  2:457114/1‑149 (MQ=255)                                                                                                                          gCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTCCCTGATTTGGCCGGTTGAGCTgc                               >  1:48915/1‑142 (MQ=255)                                                                                                                           cccgctGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGtt                        <  2:264592/144‑1 (MQ=255)                                                                                                                                  ccAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGac                 <  2:543007/149‑1 (MQ=255)                                                                                                                                       tGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGa                  <  1:384559/143‑1 (MQ=255)                                                                                                                                            cacCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGCCACCGGTTTCCGACCCTGACcgcg       >  2:597027/1‑149 (MQ=255)                                                                                                                                             acCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACGCCGTTTTCCGACACTGACCgcgc      >  2:58368/1‑149 (MQ=255)                                                                                                                                                 tttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTAtt  <  2:122747/149‑1 (MQ=255)                                                                                                                                                 tttACACCGCTGGTACACCATCCGGCACAAGCGGTGACTACATTGACGATGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGCCACCGTTTTCCGCCACTGACcgc        >  1:622157/1‑143 (MQ=255)                                                                                                                                                   cacacCCCTGGTACACCATCCCGCACCAGCGGTGACTACATTGCCGACGACCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCATGTTGAGCTGACACCGTTTTCCGACACTGACCgcgc      <  1:166175/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TAATCCGCTGCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAAC‑AAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGCTATT  >  CP009273/3338204‑3338495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.