New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4098499 =	NA (NA)	3 (0.080)	3/276	5.8	NA	noncoding (1/98 nt)	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	4098524 =	NA (NA)					noncoding (26/98 nt)	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

AAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAACATATAC  >  CP009273/4098384‑4098666                                                                                                                                             |                                                                                                                                               aaaaCATGAAGCCTCCGTTCAAAGGTGACTGGCTGGAGTGCGCGAAAACACTGCACTAATAATAACCGAAAAAGGCAGATTCCTTTACCCTGAAACAAAAAAAAAAAAAAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTa                                                                                                                                              <  1:79612/143‑1 (MQ=255)         aaGCGTCCGTTCAACGGTCGCTGGCTTGACTGCGTGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAAtt                                                                                                                                      <  1:359422/143‑1 (MQ=39)           gCGTCCGTTCAATGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCTCTTCGCTTATCAGGCCTACATGAATTCt                                                                                                                                    <  1:18402/143‑1 (MQ=255)           gCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGACTAGTGCTCTACGCTTATCAGGCCTACATGAATTCTGCAAtt                                                                                                                              >  2:478461/1‑149 (MQ=255)           gCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGAAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAAAAGAAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCt                                                                                                                                    <  1:18233/143‑1 (MQ=255)               cccttCACAGGTGACTGGCTGGACCGCGCGAAAAAACTGTCTTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATAACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCaa                                                                                                                                <  1:408454/140‑1 (MQ=39)                  ttCAAAGGTGACTGGCTGGACTGCGAGAAATCAATATGTTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTCaa                                                                                                                       >  2:695254/1‑149 (MQ=38)                     aaaGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTAtt                                                                                                                          >  1:333992/1‑143 (MQ=255)                         gTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCaa                                                                                                                >  2:4616/1‑149 (MQ=255)                         gTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCaa                                                                                                                >  2:468442/1‑149 (MQ=255)                           gACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAAc                                                                                                              <  2:130138/149‑1 (MQ=255)                                gctggACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTg                                                                                                         >  2:679468/1‑149 (MQ=255)                                  tggACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAAGGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGtg                                                                                                       <  2:274437/149‑2 (MQ=255)                                   ggACTGCGCGAAAAAACTGTATCAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAg                                                                                                      <  2:130273/149‑1 (MQ=255)                                     aCTGCGCGAAAAAACTGTAGTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGc                                                                                                    <  2:325714/149‑1 (MQ=255)                                         cgcgAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAg                                                                                                      >  1:641777/1‑143 (MQ=255)                                                    tGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAACTTATTGAATTTGCAAACTTTAGTAGGCCGGATAAgg                                                                                           >  1:15951/1‑143 (MQ=255)                                                        ttAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAGCGGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGtt                                                                                       >  1:484043/1‑143 (MQ=255)                                                          aaTGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGACTACATGAATTCTGCACTTTATTGAATTTGCAAACTTTAATAGGCCAGGTAAAGCGGTcg                                                                                     >  1:606274/1‑143 (MQ=37)                                                           aTGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCATGACTACATGCATTCTGTAACGCATTGCATTTGCAAACTTTTGTAGACCGGATAAGGCGTTCGCGCCGCa                                                                              >  2:134699/1‑149 (MQ=37)                                                                           gCAGATTCCTCTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATgg                                                                    <  1:440307/143‑1 (MQ=255)                                                                               atcccTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGAGGCGCTTCGCTTAGCAGGCTTACATGAACTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACaa                                                                <  1:5304/140‑1 (MQ=25)                                                                               aTTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACaa                                                                >  1:111510/1‑143 (MQ=255)                                                                                 tCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACt                                                        <  2:259805/149‑1 (MQ=255)                                                                                   cTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCGTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAgcg                                                            >  1:414247/1‑143 (MQ=255)                                                                                    tttCCCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAgcgc                                                           <  1:562999/143‑1 (MQ=255)                                                                                      tACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGTGCGCTTTGTc                                                   <  2:532087/149‑1 (MQ=255)                                                                                       aCCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCa                                                  <  2:123005/149‑1 (MQ=255)                                                                                           tGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGt                                                    >  1:516147/1‑143 (MQ=255)                                                                                               aCCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGACATGGACAAAGCGCACTTTGTCAGCACTATg                                          >  2:530005/1‑149 (MQ=255)                                                                                                    tGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAatat                                           >  1:175800/1‑143 (MQ=255)                                                                                                    tGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCg                                     >  2:122672/1‑149 (MQ=255)                                                                                                          aaGCAAAAATGCCTGATGCGCTTCGCTTCTCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAGACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATttc                               >  2:424908/1‑149 (MQ=255)                                                                                                              aaaaaTGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTcc                           <  2:373953/149‑1 (MQ=255)                                                                                                               aaaaTGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGAttt                                >  1:391590/1‑143 (MQ=255)                                                                                                                 aatggttGATGCGCTTCGCTTATCAGGCCTACATTAATTTTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGTGCCGCATCCGGCATGGACAATTCGCACTTTGTCAGCAATATGAGGCGGATttct                              <  1:242416/137‑1 (MQ=21)                                                                                                                 aaTGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGcc                        >  2:670122/1‑149 (MQ=255)                                                                                                                   tGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATttcttc                            <  1:89099/143‑1 (MQ=255)                                                                                                                        gATGCGCTTCGCTTATCAGGCCTACATGATTTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTaa                 <  2:174337/149‑1 (MQ=255)                                                                                                                         aTGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAAt                >  2:315435/1‑149 (MQ=255)                                                                                                                              cttcgcttATCGGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTGGCGCCGCATCAGGAATGGACAAAGCGCACTGTGTCAGCAATATGAGGCGGCTTTCTTCCGCAgttttta                 >  1:480512/1‑141 (MQ=21)                                                                                                                               ttcgcttATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCa          >  2:450404/1‑149 (MQ=255)                                                                                                                                tcgcttATCAGGCCTACATGAATTTTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTCCTTCCGCCTTTTTAATCCCTCaa         <  2:372630/149‑1 (MQ=255)                                                                                                                                 cgcttATCAGGCCTACATGCATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAAc        <  2:554774/149‑1 (MQ=255)                                                                                                                                  gcttATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATccc             <  1:219196/143‑1 (MQ=255)                                                                                                                                   tttgtCAGGCCTACATGAATTCTGCGATTTATTGGAGTTGCAAAGTTTTGGAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCCACat      >  2:318698/5‑149 (MQ=38)                                                                                                                                    ttATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTc           >  1:2161/1‑143 (MQ=255)                                                                                                                                       tCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAACCTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAAc        >  1:74603/1‑143 (MQ=255)                                                                                                                                             cTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAACATATAc  <  1:428359/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                               AAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAACATATAC  >  CP009273/4098384‑4098666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.