New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 284124	70 (1.510)	3 (0.070)	3/272	6.9	4.5%	coding (750/759 nt)	yagI	CP4‑6 prophage; putative DNA‑binding transcriptional regulator
	?	CP009273	= 284150	62 (1.430)					coding (724/759 nt)	yagI	CP4‑6 prophage; putative DNA‑binding transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTATGAGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/283969‑284124 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccgggCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGCCC  <  CP009273/284150‑284006                                                                                                                                                                                                                                                                                                               GTATGAGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCA                                                                                                                                                          >  1:285267/1‑149      cGGCGTGGAAGCGGTCGGACGAGTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCCCTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTC                                                                                                                                                           <  2:63785/142‑1          GTGGGAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCTACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGC                                                                                                                                                       >  2:310902/1‑143          GTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTCAGCGGGCTTCGTCTACTTCCCCTACGAGCCGGTCTAACGGCTCAGGC                                                                                                                                                       >  2:555741/1‑143             GAAGCTGTCGGACGGCTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTGCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGG                                                                                                                                                    <  2:101688/143‑1              AAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGG                                                                                                                                                   <  2:662707/143‑1                           ACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGCTCGCGCTCTCGC                                                                                                                                      <  2:391510/143‑1                                        GCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTATGAGCCGGTCTAACGGCTCAGGCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGC                                                                                                                   <  1:705444/149‑1                                             GCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAG                                                                                                              <  1:228876/149‑1                                                                                                                                                     AGGCCGGGCCCGCGCTTACGCGCGCCCTGGCCCACCCGGCCAGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCCCGCAGCAGCCGTCGCCGCGGATGTCCTCGCAGTGCATGCCCACAAACGCGCCGGTGAAGAAGCCGC      <  1:25844/149‑1                                                                                                                                                      GGCCGGGCTCGCGCTCCCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCG     <  1:338570/149‑1                                                                                                                                                         CGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCC        <  2:639152/143‑1                                                                                                                                                         CGGGCTCGCGCGCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGCCC  <  1:748763/149‑1                                                                                                                                                         CGGGCCGGCGCCCCCGGGCGCGCTGGGGTACCCGGCCAGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGCCC  <  1:147786/149‑1                                                                                                                                                                                                                                                                                                               GTATGAGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/283969‑284124 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccgggCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGCCC  <  CP009273/284150‑284006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.