New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3084336 =	44 (0.950)	4 (0.090)	3/276	7.0	8.7%	coding (631/708 nt)	endA	DNA‑specific endonuclease I
	?	CP009273	3084354 =	42 (0.950)					coding (649/708 nt)	endA	DNA‑specific endonuclease I
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTA  >  CP009273/3084207‑3084499                                                                                                                                                    |                                                                                                                                                  gCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGaa                                                                                                                                                  <  1:408930/149‑1 (MQ=255) gCACGCGGTGCCATGGCGCGCACCTACTTCTCTATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGaa                                                                                                                                                  <  1:233726/149‑1 (MQ=255)        gTGCCATTCCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAg                                                                                                                                                 <  2:339183/143‑1 (MQ=255)                  gcgcACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCa                                                                                                                                       <  2:46437/143‑1 (MQ=255)                     cACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATc                                                                                                                                    <  2:130240/143‑1 (MQ=255)                      aCCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAAccc                                                                                                                             >  1:166805/1‑149 (MQ=255)                        cTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGACGGTGCAGGGCAATCATa                                                                                                                                 >  2:484827/1‑143 (MQ=255)                          aCTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATaaa                                                                                                                               >  2:543809/1‑142 (MQ=255)                          aCTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTAt                                                                                                                         <  1:3341/149‑1 (MQ=255)                                  ctGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAAcg                                                                                                                 <  1:329953/148‑1 (MQ=255)                                  atGCGCGACCAATACACCCTGACACTCTCCCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAAcg                                                                                                                 <  1:1600/149‑1 (MQ=255)                                        gACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGACAAGCCTAACCCGTATGTGCAAcg                                                                                                                 >  2:22825/1‑143 (MQ=255)                                              tACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCGTAACCCGTATGTGCAATGCGCTTGCCAGgc                                                                                                     >  1:747749/1‑149 (MQ=255)                                                cAACCTGCCACTCCCTCCCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGGGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGgcgc                                                                                                   <  1:281110/149‑1 (MQ=255)                                                 aaCCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATACCCCGTATGGGCACCGCGCTTGccg                                                                                                        >  2:259282/1‑142 (MQ=255)                                                    cTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGaaa                                                                                               <  1:231670/149‑1 (MQ=255)                                                    cTGACACTCCCCCGCCAGCCACCGCAGCTGTTCAACGCCTGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGgc                                                                                                     <  2:555695/143‑1 (MQ=255)                                                     ggACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAag                                                                                              <  1:536904/148‑1 (MQ=255)                                                       acacCCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTAGCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAagag                                                                                            <  1:219212/149‑1 (MQ=255)                                                               tcGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGacctaaccta                                                                                    >  1:35260/1‑149 (MQ=255)                                                                     gCAAACGCAGCTGTTCAACGCATGGAACAAGATGTAGCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTa                                                                                    <  2:311707/143‑1 (MQ=255)                                                                      cAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGGGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGc                                                                             <  1:284217/149‑1 (MQ=255)                                                                       aaaCGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTaca                                                                                  >  2:412670/1‑143 (MQ=255)                                                                               cTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGAAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCtt                                                                    <  1:321703/149‑1 (MQ=255)                                                                                  ttCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAAGCTACACTAGCGGGGtt                                                                       >  2:215686/1‑143 (MQ=255)                                                                                        gCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAAc                                                           <  1:193185/149‑1 (MQ=255)                                                                                                  aGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCGGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCa                                                 >  1:152659/1‑149 (MQ=255)                                                                                                    aTGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGCATGTGCAACGCGCGTGCCAGGCGCGAACGAGCTAAACTACACGAGCGGGATCCCTTTTGTGAACCCCTAc                                                     >  2:3666/1‑143 (MQ=255)                                                                                                        acccGGCTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCa                                                 <  2:452207/141‑1 (MQ=255)                                                                                                                      tGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGga                             <  1:369806/149‑1 (MQ=255)                                                                                                                          aGTGCGAGCGCGATGAACGCACCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcggttgtacgcgtggg                               <  2:47940/143‑15 (MQ=255)                                                                                                                           gTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAgacga                        >  1:519021/1‑149 (MQ=255)                                                                                                                              cGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGgaga                           >  2:630834/1‑143 (MQ=255)                                                                                                                              cGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCCAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGCgaga                           <  2:540146/143‑1 (MQ=255)                                                                                                                                 tcgcgatgcgttcATCGCGAAGGTGCAGGGCCATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTCGGGAGCCGAAGCGGa                  >  1:657545/13‑149 (MQ=255)                                                                                                                                 tcgcgatgcgttcATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAgacga                        >  2:648878/13‑143 (MQ=255)                                                                                                                                     gATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGTATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGAtttt              <  1:479618/149‑1 (MQ=255)                                                                                                                                     gATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGAtttt              >  1:295113/1‑149 (MQ=255)                                                                                                                                      aTGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTTTTAGCCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGAttttt             <  1:509996/149‑1 (MQ=255)                                                                                                                                        gAACGCATCGCGAAGGTGCAGGGCATTCATACCCCGCACGTGCAACGCGCTTGCCAGGCGCGAAAGAGCCAACCTACACTTGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTaa           <  1:109275/149‑1 (MQ=255)                                                                                                                                        gAACGCATCGCGAAGGTGCAGGGCAATCATACCCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTaa           <  1:698379/149‑1 (MQ=255)                                                                                                                                        gAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTCTGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGCATTCTTTTTGTTAACCCCTACCCCACGCGTACATGCGCGTGGGGAGACGACGCGGATTTTTaa           <  1:515311/149‑1 (MQ=255)                                                                                                                                        gAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTaa           <  1:415184/149‑1 (MQ=255)                                                                                                                                           cGCATCTCGAAGGTGCAGGGCAATCATACCCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACGCTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGAtttt              <  2:509533/143‑1 (MQ=255)                                                                                                                                              aTCGCGAAGGTGCAGGGCAATCATACCCCGTATGTGCAACGCGCACAACAAGAGGTATAGAGCTACCCTACTCTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGc     <  1:151719/149‑1 (MQ=255)                                                                                                                                                 gcgAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTa  >  1:785325/1‑149 (MQ=255)                                                                                                                                                    aaGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGc     <  2:74772/143‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTA  >  CP009273/3084207‑3084499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.