New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2298321 =	NA (NA)	13 (0.160)	9/274	10.2	18.1%	noncoding (426/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	CP009273	2298402 =	62 (0.710)					noncoding (507/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCG  >  CP009273/2298174‑2298420                                                                                                                                                    |                                                                                                    ttGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTCCACCGCGGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAGCGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt                                                                                                    >  2:1221612/1‑149 (MQ=255)    ccTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCtccc                                                                                                 >  1:510410/1‑146 (MQ=255)         tGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt                                                                                            >  2:248996/1‑149 (MQ=39)           cGACGCTGGCGCGTCTTATCAGGCCTCCACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtgt                                                                                          <  1:726653/149‑1 (MQ=255)             aCGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGGAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTAGAcccatctgg                                                                                        >  1:1128683/1‑142 (MQ=11)             aCGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa                                                                                        <  2:556381/149‑1 (MQ=40)                        gcTTCTCAGGCCCACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGACAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCAcc                                                                             <  2:1280464/148‑1 (MQ=255)                         cTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACCCCGCTGGGCAGTGCCCCGccc                                                                            >  2:1057259/1‑149 (MQ=14)                                 gCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACGTCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTc                                                                    >  2:653612/1‑149 (MQ=255)                                       acCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATaa                                                              >  2:735053/1‑149 (MQ=255)                                         cGCTGTGAAGTGCTCCACCCCGTAGGTTGGATCAGGCGATTACCCCGCACCCGACATCCAACGTCCCAGCCGGTTGCCTGATGCGACCCTGACGCGTCTAATCAGGCCTACACCGCTGTGCAGTCCTCCACCCCCTATGTCGGaccagg                                                            >  2:1244909/1‑144 (MQ=14)                                           cTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCg                                                          <  1:735053/149‑1 (MQ=255)                                           cTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCg                                                          <  1:425073/149‑1 (MQ=255)                                               gAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTa                                                      >  2:1000573/1‑149 (MQ=255)                                                aaGTGCTCCACCCCGTGGGTTGGTTAAGGCGGTTACGCCGCATCGGACATCCAACGTCCGAGCCGGTTGCCTGTTGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAc                                                     <  1:27089/149‑1 (MQ=255)                                                aaGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAc                                                     <  1:958288/149‑1 (MQ=255)                                                  gTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgc                                                   <  1:248996/149‑1 (MQ=255)                                                  gTGCGCCACCCCGTAGGTCGGATACGGCGGTTACGCCGCATCCGACAGCCACCGCCCGGGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgc                                                   <  2:530851/149‑1 (MQ=11)                                                   gctccccaccgggtggTTTGATTAGACTGTTACGCCGCATTCGAAATCCAACTCCCGAGCCGGTTCTCTTATGCGACGCTGCCGCGTCTTATCATGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgcc                                                  <  2:427488/135‑1 (MQ=11)                                                   cgCTGCACCCCTGAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGGCCGAGCCGGTTGACTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgcc                                                  <  2:514828/148‑1 (MQ=14)                                                      tCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTGATCAGGCCGACACCGCTGTGAAGTGCTCCCCCCCGTAGGTCGGATAAGGCGGTCAcgccccc                                               >  2:1151633/1‑146 (MQ=14)                                                       ccACCCTGTAGCGTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt                                              <  2:292055/149‑1 (MQ=255)                                                        cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATgcggcgtaaccgccttatc                                             >  2:389516/1‑136 (MQ=14)                                                            ccGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAc                                         >  1:1143407/1‑149 (MQ=255)                                                            ccGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAc                                         <  1:1000573/149‑1 (MQ=255)                                                            ccGTAGGCCGCACAAGGCGGCTACCCCGCATCCCACAACCACCCTCCGACCCGCTGGCCTGATGCGACGCTGGCGCGTCTCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAc                                         <  2:1107233/149‑1 (MQ=11)                                                                 ggTTGGATACGGCGGCAACGCGGCACCCGACTTCCAACGACCCACTCGGTTGCCTGGTCCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCAGTAGAACGGATAAGGCGGTTACGCCGCATCCGACATCTa                                    <  2:318376/149‑1 (MQ=11)                                                                  gctgcgcacggCGGTTCTGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTaa                                   <  2:864488/140‑1 (MQ=11)                                                                  gTTGGATAAGGCGGTTACGCCGCCTCCGACATGCAACGACCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCGTATCAGGCCAACACCGCTGTGAAGTGCTCCACCCCGTAGGGCGGATAAGGCGGTTAAGCCGCATCCGagctatag                                   >  1:783042/1‑142 (MQ=11)                                                                   ttGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGt                                                        <  2:639366/127‑1 (MQ=255)                                                                   ttGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGt                                                        >  1:639366/1‑127 (MQ=255)                                                                      gATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGGCGCTGGCGCGTCTTATCAGGCCTACACCGCTTTGAAGTGCTCCACCCCGTAGGTCGGAGAAGGCGGTTACGCCGCATCCGACACGNAACGcc                               >  2:192054/1‑149 (MQ=11)                                                                      gATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt                                                                                            <  1:715212/88‑1 (MQ=255)                                                                       ctAAGGCGTTTANCCCGCATCCGCCACCCNCCGTCCGAGCCGTTTGCCNGATGCGACGCTGGCGCGTCTTATCAGGCCGACACCGCTGTGAAGTGCTCTACCCCTTAGGTCGGATAAGGCGGTTACCCCGCATCCGACATCTAACGccc                              <  1:192054/148‑1 (MQ=11)                                                                       aTAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGt                                                                         >  1:1082421/1‑106 (MQ=40)                                                                       aTAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGt                                                                         <  2:1082421/106‑1 (MQ=40)                                                                         aaGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCaa                            >  2:282887/1‑149 (MQ=35)                                                                           ggCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCGTCCGACATCTAACGCCCAAGc                          >  1:1251588/1‑149 (MQ=25)                                                                            gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGCCGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACACCTAACGCCCAAGcc                         >  1:568555/1‑149 (MQ=25)                                                                               gTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGGGCTCCACCCCGTAGGACGGATAAGGCGGTTGCGCCGCATCCGACATCTAACGCCCAAGCCGGt                      >  2:1288106/1‑149 (MQ=255)                                                                                taaccccgcTTCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAAcctttt                     <  2:1330829/144‑5 (MQ=11)                                                                                  aCGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGc                   <  1:1357625/149‑1 (MQ=32)                                                                                   cgccgcATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTCGGTCGGATAAGGCGGCTACGCCCCATCCGACATCCCACCCCCACGcccgctccc                  >  2:155775/1‑142 (MQ=11)                                                                                    gccgcATCCGACATCCAACGTCCGAGCCGGTTGCCTGAGGCGACGCTGGCGCGGCGTATCAGGCCTACACCGCTGGGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCt                 <  1:512671/149‑1 (MQ=255)                                                                                       gctgcccaCATCCAACGTCCGGGCCGGTTGCCTGATGCGACGCTGGCGTGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGACGCATCCGACATCTAACGCCCAAGACGGTTGACTGAt              <  2:1276006/142‑1 (MQ=11)                                                                                       gcATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGAt              <  1:1173559/149‑1 (MQ=32)                                                                                            cGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCCTCCTACAGCTATCGCCCCAGCCGGTTGCCTGATGCgcc         >  1:632648/1‑147 (MQ=11)                                                                                             gACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCGACCCGGTAGGGCGGATAAGGCGGTTACGCCGCATGCGACGTCTAGTGCGAAGGCGGGTTGCTTGATGGGagg        >  2:501566/1‑147 (MQ=11)                                                                                             gACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCCAGCCGGTTGCCTGATGCGACg        >  1:129077/1‑149 (MQ=17)                                                                                             gACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACg        >  2:1427655/1‑149 (MQ=32)                                                                                                  ccAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGgc   >  2:1113295/1‑149 (MQ=32)                                                                                                   cAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGgcg  >  1:865723/1‑149 (MQ=32)                                                                                                                                                    |                                                                                                    TTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCG  >  CP009273/2298174‑2298420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.