New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1972748 =0 (0.000)51 (0.940) 35/294 0.6 100% intergenic (‑294/‑486) flhD/uspC flagellar class II regulon transcriptional activator, with FlhC/universal stress protein
?CP009273 = 2283592 NA (NA)noncoding (1/1195 nt) IS5 repeat region

ATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1972895‑1972748
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGC  <  CP009273/2283592‑2283444
                                                                                                                                                                                                                                                                                                           
ATGATTATTTACGGTGAGTTATTTTGACTTTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAG                                                                                                                                                        <  2:405749/149‑1
    TTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAG                                                                                                                                                    <  2:747738/149‑1
       gtgACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTG                                                                                                                                                 <  1:23093/146‑1
           cggttgttgATTTTGACTGTGCGCAAGATCGCTTTTCGATTATTCCTGTTTCATTTTTGATTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAA                                                                                                                                            <  1:312288/140‑1
              TGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAA                                                                                                                                         >  2:108762/1‑149
              TGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGA‑GAACAA                                                                                                                                         >  1:260118/1‑149
                AGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGT                                                                                                                                       <  2:368931/149‑1
                     TTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTG                                                                                                                                  >  2:382510/1‑149
                          ACTGTGGGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGGTAGCAAAGAGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATG                                                                                                                            <  2:429304/149‑1
                           CTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGA                                                                                                                           <  1:205664/149‑1
                            TGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGGGC‑GAACAAGACCCTGAT‑ATGAG                                                                                                                          >  2:715901/1‑149
                             gcgtGCATCATCCCATTTCTATTATTCCTGTTTTATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTAGGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGA                                                                                                                         <  1:196399/145‑1
                                     CATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTT                                                                                                                 >  2:490347/1‑149
                                       TCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑CTGAGATCATGTTTGT                                                                                                               >  2:366318/1‑149
                                       TCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGGAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGT                                                                                                               >  2:640602/1‑149
                                        CCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTC                                                                                                              >  2:188458/1‑149
                                               CGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGA                                                                                                       <  2:454147/149‑1
                                                   ttgTCCTTTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTTAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCA                                                                                                   <  1:297618/146‑1
                                                    ATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑CTTCGATCAGATTTGTCCTCTGGAGCCAT                                                                                                  >  2:112369/1‑149
                                                      TCCTGTTTCATTCTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAG                                                                                                >  2:643791/1‑149
                                                                   TTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATC                                                                                   >  2:713040/1‑149
                                                                      ctcGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGG‑AGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA                                                                               <  2:252624/146‑1
                                                                      CTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATa                                                                                >  2:891758/1‑148
                                                                       cTGCTAGCGTAGCGAATATCTTTTTAACAGATTGAAGTACACCCAAGGCAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGg                                                                               >  1:82349/2‑148
                                                                         GCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGT                                                                             <  2:445873/149‑1
                                                                           TAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA                                                                           >  1:471320/1‑149
                                                                             GCGTAGCGAAAAACTTTTCAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATC                                                                         >  1:770135/1‑149
                                                                                     AAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC                                                                 >  2:568192/1‑149
                                                                                     AAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTAACTGGTGATG‑TAGCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC                                                                 >  2:873948/1‑149
                                                                                          CTTTTTATCAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑CAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGC                                                            <  2:361805/149‑1
                                                                                               TAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA                                                       <  2:773547/149‑1
                                                                                                           ATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCA                                           <  1:108762/149‑1
                                                                                                               ACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAA                                       >  1:357383/1‑149
                                                                                                                 CCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGC                                     >  2:705097/1‑149
                                                                                                                 CCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGC                                     >  1:526629/1‑149
                                                                                                                          AAGTATGACTTATCCATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGA                            <  1:571114/149‑1
                                                                                                                             TATGACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCA                         >  2:319298/1‑149
                                                                                                                                GACTTATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGACATCAACTTACATTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAA                      >  1:523027/1‑149
                                                                                                                                    TATACATTTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTGCGCCGACAGTGAATTCAGCAGTAAGCGCCGCCAGACCAGAcacga                  >  1:412752/1‑144
                                                                                                                                           TTATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC           <  2:471320/149‑1
                                                                                                                                             ATGTTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT         <  2:38992/149‑1
                                                                                                                                                TTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC      <  1:865014/149‑1
                                                                                                                                                TTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC      >  2:679585/1‑149
                                                                                                                                                TTAAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC      <  1:530968/149‑1
                                                                                                                                                TTAAGGAA‑GTGCGGAACAAGTCCCCGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC      <  1:467172/149‑1
                                                                                                                                                  AAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGCCAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAAATTTTCTTGTCCC    >  1:506354/1‑149
                                                                                                                                                  AAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCC    >  2:355495/1‑149
                                                                                                                                                  AAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCC    >  1:165628/1‑149
                                                                                                                                                  AAGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCC    >  1:784317/1‑149
                                                                                                                                                   AGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG   >  2:52916/1‑149
                                                                                                                                                   AGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG   >  1:759987/1‑149
                                                                                                                                                   AGGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCG   >  1:882859/1‑149
                                                                                                                                                    GGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGC  >  1:703196/1‑149
                                                                                                                                                    GGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGC  >  2:134126/1‑149
                                                                                                                                                    GGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCACCGACAGTGAATTAAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCGTGTACCGC  >  2:465070/1‑149
                                                                                                                                                                                                                                                                                                           
ATGATTATTTACGGTGAGTTATTTTGACTGTGCGCAACATCCCATTTCGATTATTCCTGTTTCATTTTTGCTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1972895‑1972748
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGC‑GAACAAGTCCCTGAT‑ATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGC  <  CP009273/2283592‑2283444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.