New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 41613736 (0.110)11 (0.210) 6/290 5.9 65.2% noncoding (2805/2904 nt) rrlB 23S ribosomal RNA of rrnB operon
?CP009273 = 4202760 NA (NA)noncoding (2790/2904 nt) rrlE 23S ribosomal RNA of rrnE operon
Rejected: Coverage evenness skew score above cutoff.

CGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGA  >  CP009273/4161226‑4161500
                                                                                                                                                   |                                                                                                                               
cgggagGACCGGAGTGGACGCATCACTGGTGTGCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCTTCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTcc                                                                                                                                <  1:449880/146‑1 (MQ=0)
                                                   gctcTGCCCGGTAGCTAAATGCGGAAGGGATAAGTGCTGGAAGCAGCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTCATAGGCCGGGTGTGTCAGCGCAg                                                                             <  1:608771/146‑1 (MQ=1)
                                                              cacccaactGCGGAAGAGATAAGGGCGGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGACGGAACGTTGAAGACGACGCCGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGa                                                                  <  2:187452/141‑1 (MQ=1)
                                                                            agagATCAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTGTAAGGGTCCTGGAGGAACGTAGAGGACGACGCCGAGGCTAGGGCGGGTGTGTAACCACAGCGATTCGTAGGGCGAAGCGGAAcaa                                                    >  1:593329/1‑147 (MQ=1)
                                                                                                    agaaCGACACGTGCCCCGACATCAGTTCTCCCTGACCCTTTAAGGGTCCTGACGGAACGTTGAAGACGACGACGTTGATAGGACGGGTGCGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTAc                            <  2:144131/146‑1 (MQ=1)
                                                                                                                              tatcacTGAGCATTTAAGGGTACGGTAGGAGCATGGATGTTGTCGTCGTGGATAGGCCGGGTTTTTAAGCGCAGCGATGCTTTGAGCTAACCGGGACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATga  <  1:615338/144‑1 (MQ=0)
                                                                                                                                                   |                                                                                                                               
CGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGA  >  CP009273/4161226‑4161500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.