| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,519,265:1 | +A | 3.9% | intergenic (+15/+24) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,519,265 | 1 | . | A | 3.9% | 424.6 / 11.3 | 102 | intergenic (+15/+24) | yfeN/yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| Reads supporting (aligned to +/- strand): ref base . (57/41); new base A (2/2); total (59/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-02 | |||||||||||
Only 100 of 105 total aligned reads displayed.
TGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGC > CP009273/2519118‑2519409 | tGGCCCAGTTTCAATGGGGTGGAATGCAACATCACATATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCggg‑g < 1:191271/149‑1 (MQ=255) gcAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTACCGATATGGGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACATCTGATTGATTACTGCCGGG‑GCTcc > 1:796532/1‑149 (MQ=255) cAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCggg < 2:40073/143‑1 (MQ=255) ttGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCt > 2:980109/1‑143 (MQ=255) tGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCa < 1:1226941/149‑1 (MQ=255) gCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGAGC‑CCCGGCAg < 1:1100593/149‑1 (MQ=255) cACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGCATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTccc > 2:461974/1‑143 (MQ=255) cTGTGGTGGAAGGCAACATCACACCTTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACGCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTAt < 1:1203494/149‑1 (MQ=255) atttagtagaagacAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTAt < 1:1087885/136‑1 (MQ=255) tgtgGTGGAATGCAACATCACACATTACTGCGGGGATTCAGTATCGATATGCGAATGACAAGCTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑ACTCCCGGCAGTATg > 1:795724/1‑149 (MQ=255) tggtggAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGaa > 1:812477/1‑149 (MQ=255) gAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTCCTGCCGGG‑GCTCCCGCCAGTCTGa > 2:822718/1‑143 (MQ=255) aTGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACT‑CATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCActct > 1:1259892/1‑149 (MQ=255) tGCAACATCACTCATGTCTACGGGGATTCAGTATCGGTATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGAGC‑CCCGGCAGTaatcaat < 2:308412/143‑7 (MQ=255) cgaaaCATCACACATTACTACGGGGGTTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAAGATGCAtt > 2:1053518/4‑143 (MQ=255) cAACATCACACATTCCTACGGGGATACAGTATCTATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAAGCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCTGG‑GCTCCCGGCAGTATGAATTCACTCtat < 1:793047/149‑1 (MQ=255) cAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCTATGCAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCtat > 1:623443/1‑149 (MQ=255) aCATCACACATTGCTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCAct < 2:773647/143‑1 (MQ=255) cacaTTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATa < 1:481393/149‑1 (MQ=255) ttACTACGGGTATTCAGTATCGATATGCTGATTACTATCTGGGTGAAGATTTTTACCAGGATGCGATAATCTACCCCATCAAATTTAACTTCTGATTGATTACTGGCGGG‑GCTCCCGGCAGTATTAATTCACTCTATATCTGATACAAc < 1:376034/149‑1 (MQ=255) ttACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGa < 2:793293/143‑1 (MQ=255) ttACTACGGGGATTCAGTATCGATATGCGGAGGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTgc > 2:792069/1‑142 (MQ=255) cttcGGGCATTCAGTATCGATATCCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATTATTTCACTCTATATCTGATACAACGGa < 1:446035/146‑1 (MQ=255) ctacGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGa < 1:428123/149‑1 (MQ=255) acGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCCGTGCGGATTCACCCTATATCCGTGACAACGGacg > 1:109099/1‑147 (MQ=255) cGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATcc > 1:1083937/1‑149 (MQ=255) ttCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCCCTCTATATCTGATACAACGGATCCCCTTcc > 1:5611/1‑149 (MQ=255) ttCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTcc > 1:478713/1‑149 (MQ=255) tCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATccc < 2:850554/143‑1 (MQ=255) tCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGAAGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTCTGCATTCACTCTAAATCTGCTACAACGGATccc > 2:315270/1‑143 (MQ=255) cggTATCGAGATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATcccc < 2:623587/141‑1 (MQ=255) cAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCg > 1:419061/1‑149 (MQ=255) aGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGc < 1:599655/149‑1 (MQ=255) aTCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGACAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCa > 1:800342/1‑149 (MQ=255) tCGATATGCGGATGACAAGCTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTACATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTACATCTGATACAACGGATCCCCTccca > 2:727903/1‑142 (MQ=255) cGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGc > 1:1221617/1‑149 (MQ=255) atatGCCGAAGACTAACCTGGCGAAAATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGTG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGcc < 2:734492/143‑1 (MQ=255) tatCCGGATGACAAACTGGGCGAAGATTTTTAGCAGGATGCGATCATCTACTCCATCAAATTTAACTTCTGATCGATTACTGCCGGG‑GCGCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCCTCCCGccc > 2:814014/1‑143 (MQ=255) atGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCAtt > 1:1239437/1‑149 (MQ=255) aggCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCa < 2:941191/141‑1 (MQ=255) cGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAgc > 1:1157979/1‑149 (MQ=255) aTGAAAAGCGGGGCGAAGAATATTACCAGGATGCGATAAAATACACCACCTAAGTTAACTGCCGATTGGTCGCTTCCGGT‑GCCAAACGCAGTATTAAGGCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCa < 1:953373/149‑1 (MQ=255) cTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTg > 1:783911/1‑149 (MQ=255) ggCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGcc > 2:431181/1‑143 (MQ=255) cGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGtctc < 1:640903/149‑1 (MQ=255) gAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTCGCGCATTGCCCTg > 2:901928/1‑143 (MQ=255) gAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCg > 1:1235433/1‑149 (MQ=255) aGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTa > 1:710562/1‑149 (MQ=255) tttttACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCa < 1:286236/149‑1 (MQ=255) tttccccgaaTGCGATAATCTACTCCATCAAATTTCACTTCTGCTTGATTACTGCCGGG‑GCTCCCGGCAGTATGCATTCACTCTATATCGGATACAACGGCTCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGt < 2:1127638/134‑1 (MQ=255) tttACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCGCCCGGCAGTATGCATTCTCTCTATATCTGATAACACGGATCCCCTTCCCGCCCAGCCATCAGCGCATTGCCCTGGtcgctg > 2:271541/1‑139 (MQ=255) tACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTc < 1:514394/149‑1 (MQ=255) tgttGCGATAATCTACTCCATCAAACTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATa < 1:301/146‑1 (MQ=255) gATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATaa > 1:1289687/1‑149 (MQ=255) gATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATaa < 1:605800/149‑1 (MQ=255) aTGCGATAACCTACTCCATCAAATTTACCTCCGGATTGACTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATaaa < 1:120186/149‑1 (MQ=255) tGCGATACTCTACGCCATCAAATGTAACTTCTGATTGGTTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTccc < 2:397975/143‑1 (MQ=255) tGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATACCTGATACAACGGATCCCCTCCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTccc < 2:397815/143‑1 (MQ=255) cGACAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCCTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCAt < 2:904384/143‑1 (MQ=255) tACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATCAAGCTTc > 2:390267/1‑143 (MQ=255) tACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAACGCTTc > 2:1031422/1‑143 (MQ=255) tCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGt > 1:1023685/1‑149 (MQ=255) atcATAAAATTTAACTTCTGTTTGCGTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGt < 1:939866/147‑1 (MQ=255) taTCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTgg < 1:320138/148‑1 (MQ=255) cATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTgg > 1:831453/1‑149 (MQ=255) aTCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGATTCAGCGGCGGTGGa > 1:572701/1‑149 (MQ=255) tCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGaa > 1:10064/1‑149 (MQ=255) tCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGaa > 1:1195578/1‑149 (MQ=255) cAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTCTATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGGGGGGGaaa > 1:339624/1‑149 (MQ=255) ctttAACTTCTGATTGATTACTGCCGGG‑CCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTgg < 2:790586/142‑1 (MQ=255) tAACTTCTGATTGATTACTGCCGGG‑GTTCCCGGCAGTGTGAATACCCTCTATATCTGTTTCATCGGCTCCCCTTCCCTCCCAGCCATGAGCGCATTGCCCTGCTCTCGTACCACGTCCCATATAGCTTCAGCGGCGGtcgtaa < 2:94372/143‑6 (MQ=255) tAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGaaa < 2:703260/143‑1 (MQ=255) aCTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACgg < 1:408154/149‑1 (MQ=255) cTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGt > 1:768278/1‑149 (MQ=255) cTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCACTGAAGCTTCAGCGGCGGGGGAAAGTg > 2:996416/1‑143 (MQ=255) ttCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGATTCAGCGGCGGGGGAAAGTGAACGGtt > 1:560186/1‑149 (MQ=255) ctCTGATTGAATGCTGCCGGG‑GCTCCCGGGAGTATGAATTCGCTCTATATCTGATACAACGGAGCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTTGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGtt < 1:495474/148‑1 (MQ=255) cTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCGGCCATCAGCGCATTGCCCTGGTCTCTTCCCACGTCCCATAAAGCTGCAGCCGCGGTGGACAGTGAAc > 2:737047/1‑143 (MQ=255) tgattgatTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAGGTGAAGGGttctt > 1:666734/1‑149 (MQ=255) gattgattACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACgg > 2:22189/1‑143 (MQ=255) gattgattACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGttcttc < 1:537917/149‑1 (MQ=255) gattgattACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGACGAAAGTGAAggg > 2:795574/1‑143 (MQ=255) gattgattACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCGTCCCGCGCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACgg > 2:344871/1‑143 (MQ=255) attgattACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAGGCTTCAGCGGCGGTGGGAAGTGAACGTTTCTTcc > 1:3130/1‑149 (MQ=255) attgattACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGt > 2:557311/1‑143 (MQ=255) attgattACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTcc > 1:654468/1‑149 (MQ=255) ttgattACTGCCGGG‑GCCCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCAAGCCAAATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCt < 1:634236/149‑1 (MQ=255) attACTGCCGGG‑GCTCCCGGCAGTATGTATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGTATTGCCCTGGTCTCGTACCACGTCCCATAAAGCGTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTgcg < 1:368131/149‑1 (MQ=255) attACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGGTCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGAGGTGGAAAGTGAACGGTTCTTCCTgcg > 1:739534/1‑149 (MQ=255) attACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGttctt > 2:1093783/1‑143 (MQ=255) ttACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTgcgc > 1:788145/1‑149 (MQ=255) atACTGCCGGGAGC‑CCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTgcgc > 1:322513/2‑149 (MQ=255) accgCCGGG‑GCCCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCt < 2:453333/140‑1 (MQ=255) aCTGCCGGGAGC‑CCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGGTCTTCCt > 2:879169/1‑143 (MQ=255) aCTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCt < 2:361868/143‑1 (MQ=255) tGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCa > 1:165433/1‑149 (MQ=255) gCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAg < 1:638797/149‑1 (MQ=255) ccGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAGCGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACAGCCCATAAAGCGTCGGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCAcaggc > 1:123011/1‑145 (MQ=255) ccGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTGGCGCATTGCCCTGGTCTCGTACCACGTCCCTTCAAGCTTCACCCGCGGTGGAAAGGGACGGGTTCTTCCTgcgc > 2:964533/1‑143 (MQ=255) ccGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGc > 1:1109928/1‑149 (MQ=255) | TGGCGCAGTTGCACTGTGGTGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGG‑GCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGC > CP009273/2519118‑2519409 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |