New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 15387 =NA (NA)6 (0.090) 6/262 NT 12.5% noncoding (1/1345 nt) IS186 repeat region
?CP009273 = 454251 42 (0.620)intergenic (+95/‑93) clpX/lon ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

CCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGC  >  CP009273/15239‑15533
                                                                                                                                                    |                                                                                                                                                   
ccGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGATAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCATGGGAAAAAATAGGATGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACt                                                                                                                                                     >  1:499193/1‑149 (MQ=255)
  accatcaaagaagctcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTcc                                                                                                                                                   >  1:109227/15‑149 (MQ=255)
      taaaaGAGGTTCTTTGATGGTGTGAAGAAGTTTTCTGACGACTTGACCCGCTACCCCCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACt                                                                                                                                                     <  2:1015629/141‑1 (MQ=255)
       cAAAGGGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCTAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCATCTGTAAAGTGGCGGGGATCACTc                                                                                                                                                    <  2:749467/143‑1 (MQ=255)
           gagCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGCTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAgcgc                                                                                                                                          <  1:896722/149‑1 (MQ=255)
            agCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATa                                                                                                                                               >  2:997398/1‑143 (MQ=255)
            agCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCt                                                                                                                                         <  1:458808/149‑1 (MQ=255)
              cttgttTGATGGTGTGAAGAAGTTTTTTGGCGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTaa                                                                                                                                       <  1:1084566/149‑1 (MQ=255)
              cttcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAACGCACGTTGGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTaa                                                                                                                                       <  1:625509/149‑1 (MQ=255)
              cttcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTaa                                                                                                                                       <  1:809783/149‑1 (MQ=255)
                 cttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGCCAGGCCTGGGTAAAAATATGGTGCGTTGAAGATAAACGAGCACCTATAAAGTAGCGGGGATCACTCACATAAGCGCTaaagt                                                                                                                                    >  1:455197/1‑146 (MQ=255)
                     gATGGTGTTAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAgg                                                                                                                                <  1:84548/149‑1 (MQ=255)
                      aTGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGCAAAAATAGGGTGCGTTGAAGAGATGCGAGCACCTGTAAAGTGGCGGGGCTCACCCCCATAAGCGCTAACt                                                                                                                                     >  2:1015466/1‑143 (MQ=255)
                          cgtgAAGAAGTTTTTTGACGATCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTAGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAg                                                                                                                                 <  2:1034097/142‑1 (MQ=255)
                              aagaagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGACCGAGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGGGGTa                                                                                                                       >  1:256052/1‑149 (MQ=255)
                               agaagTTTTTTGACGACCCGACCCGCTAACCTCCCCCAAAGCCCCCCAGACGACATGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt                                                                                                                      <  1:364328/149‑1 (MQ=38)
                                    ttttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACgg                                                                                                                 >  1:300686/1‑148 (MQ=255)
                                     tttttGCCGACCTGGCCCGCTAACCTCCCCAAGAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGAGATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt                                                                                                                      <  2:946129/143‑1 (MQ=255)
                                     tttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                                                <  1:1020592/149‑1 (MQ=255)
                                          gacgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata                                                                                                           <  1:500179/149‑1 (MQ=255)
                                           acgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                                                <  2:218633/143‑1 (MQ=255)
                                           acgacCTGACCCGCTAACCTCCCCAAAAGCCGGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                                                <  2:82380/143‑1 (MQ=255)
                                             gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGCGGATCACTCCCATAAGCGCTAACTCAAGGCTTGTGGTATTACGCCTGATATGa                                                                                                        <  1:717630/149‑1 (MQ=255)
                                                cTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACATAAGGGTAGTGGTATTCAGCCTGata                                                                                                           >  2:11687/1‑143 (MQ=255)
                                                  gACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa                                                                                                   >  1:660934/1‑149 (MQ=255)
                                                  gACCCGCTAACCCCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTTGCGGGGATCACTCCCATAAGCGCCAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTag                                                                                                   <  1:891113/149‑2 (MQ=255)
                                                     ccGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt                                                                                                <  1:747633/149‑1 (MQ=255)
                                                       gCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                                    <  2:543965/143‑1 (MQ=255)
                                                         tAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc                                                                                                  >  2:846655/1‑143 (MQ=255)
                                                         tAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg                                                                                            <  1:278479/149‑1 (MQ=255)
                                                              tCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa                                                                                       <  1:998566/149‑1 (MQ=255)
                                                              tCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGAATGTGGTATTACCCCTTATCTGAACTACCGTGCCGATGaa                                                                                       >  1:768241/1‑149 (MQ=38)
                                                                cccAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTTGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCctgatctgatatggcatgccta                                                                                           <  2:864197/143‑13 (MQ=38)
                                                                cccAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt                                                                                     >  1:44151/1‑149 (MQ=255)
                                                                 ccAAAAGCCTGCCCGTGGGCAGGGCGGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGGTCTGGTTTAACGTGCCGAt                                                                                          >  2:773417/1‑143 (MQ=37)
                                                                   aaaaGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                                                  <  1:318214/149‑1 (MQ=255)
                                                                   aaaaGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                                                  <  1:929464/149‑1 (MQ=255)
                                                                        gcTGCCCGTGGGTAGGCCTGGGTAAAGATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCTCTCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGGATTAc                                                                                   <  2:441739/142‑1 (MQ=25)
                                                                        ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACGTGCCGATGAATTAc                                                                                   >  2:1062108/1‑143 (MQ=255)
                                                                        ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAGCGTTCCCATGGATTACTCTCAc                                                                             >  1:295958/1‑149 (MQ=255)
                                                                         cTGCCCGTGGCCAGGCCAGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATCTGATTTAACGTGCCGATGAATTAct                                                                                  >  2:841894/1‑143 (MQ=255)
                                                                              cGTGCGCAGGCGTGGGTAAAAAGAGGGTGCGGTGAAGATACGCGAGCACCTGGAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                       <  1:388604/149‑1 (MQ=21)
                                                                                  ggCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGt                                                                   >  1:1045517/1‑149 (MQ=255)
                                                                                    cAGGCTTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                                       <  2:1030611/143‑1 (MQ=255)
                                                                                      ggCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTg                                                                     <  2:323933/143‑1 (MQ=255)
                                                                                               aaaaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                                      <  1:734791/149‑1 (MQ=255)
                                                                                                aaatTAGGGTGCGTTGAAGATATGCGAGCATCTGTAAAGTGGCGGGGATCATTCCCATAAGCGCTAACTTAAGGGTTGGGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGcc                                                     <  1:337532/149‑1 (MQ=255)
                                                                                                  aaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTCTTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCa                                                   >  1:1231383/1‑149 (MQ=255)
                                                                                                         tGCGTTGAAGATATGCGAGCAACTGTAAAGTGGCGGGGATCACTCCCATAAGCGGTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                            <  1:261841/149‑1 (MQ=255)
                                                                                                             ttGAAGATATGCGGGCACCTGTAAGGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                              <  2:94490/143‑1 (MQ=255)
                                                                                                             ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACCCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                              >  2:196616/1‑143 (MQ=255)
                                                                                                                aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACCTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCg                                     <  1:344761/149‑1 (MQ=255)
                                                                                                                     atGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaagaa                                >  1:822095/1‑149 (MQ=255)
                                                                                                                      tGCGAGGACCTGTAACGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCg                                     <  2:884475/143‑1 (MQ=255)
                                                                                                                        cGAGCACCTGTAAAGTGGCGGGGGTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGGTATGATTTAACGTGCCGATGAATTACTCGCACGATAACTGGTCAGCAATTCTGGCGCATCGCTGTCAGCCCgaa                                   >  2:392004/1‑143 (MQ=17)
                                                                                                                         gAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCAATATTGGTAAGCCCGAAGAACTgg                            <  1:966839/149‑1 (MQ=255)
                                                                                                                            cACCTGTAAACTGGCGGGGACCCCTCCCACAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATa                         <  1:1069778/149‑1 (MQ=255)
                                                                                                                             aCCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                              <  2:484567/143‑1 (MQ=255)
                                                                                                                             aCCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAc                        <  1:588577/149‑1 (MQ=255)
                                                                                                                             aCCTGTAAAGTGGCGGGGAGCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                              <  2:257897/143‑1 (MQ=255)
                                                                                                                              ccTGTAAAGTGGTGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACt                       <  1:1298033/149‑1 (MQ=255)
                                                                                                                              ccTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCAATGAATTACTCTCACGATAACTGGTCAGCAATTATGGCCCATATTGGTAAGCCCGAAGAAcgg                             >  2:28728/1‑141 (MQ=255)
                                                                                                                               cTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGGTACtt                      >  1:15304/1‑149 (MQ=255)
                                                                                                                                  tAAAGTGGCGGGGGTCACTCACATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTTGTATGCCCGAAGAACTGGATa                         <  2:132465/143‑1 (MQ=255)
                                                                                                                                     aGTGGGGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATCCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACtt                      <  2:26379/143‑1 (MQ=255)
                                                                                                                                     aGTGGCGGGGATCCCTCCCATAAGCGCTAACTTAAGGGTTGTGGTTTTAAGCAAGATAAGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTTGATACTTCGGCAc                <  1:889779/149‑1 (MQ=11)
                                                                                                                                     aGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCAc                <  1:154019/149‑1 (MQ=38)
                                                                                                                                         gCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGc                  >  2:43989/1‑143 (MQ=37)
                                                                                                                                         gCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTaa            >  1:197531/1‑149 (MQ=37)
                                                                                                                                                 atcTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCgggg   <  1:184230/147‑1 (MQ=11)
                                                                                                                                                   cTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGTCGCGGAATCGCCgggct  >  1:614625/1‑147 (MQ=11)
                                                                                                                                                    |                                                                                                                                                   
CCGCGCTCAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGC  >  CP009273/15239‑15533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.