New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1810442 =	NA (NA)	3 (0.050)	3/256	NT	NA	noncoding (1/189 nt)	RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	CP009273	1810472 =	NA (NA)					noncoding (31/189 nt)	RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

CTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTA  >  CP009273/1810294‑1810590                                                                                                                                                     |                                                                                                                                                     cgtgaaccttgcatccggcgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttgtagg                                                                                                                                                      >  1:265276‑M1/149‑149 (MQ=255) cgtgaaccctgcatccggcgntnaatncctacaaaggcggcgtaactgcgccgcttgagactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgctatatattgaatttgcacagttttgtagg                                                                                                                                                      >  1:783514‑M1/149‑149 (MQ=255) cTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATg                                                                                                                                                      >  1:1084580/1‑149 (MQ=255) cTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATg                                                                                                                                                      >  1:1269995/1‑149 (MQ=255) cTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATg                                                                                                                                                      >  1:403371/1‑149 (MQ=255)   tgaaccttgcatccggcgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttgtagGcc                                                                                                                                                    >  1:1260369‑M1/147‑149 (MQ=255)   gACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGcc                                                                                                                                                    <  1:1125627/149‑1 (MQ=255)    gaaccttgcatccggcgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttgtagGCCg                                                                                                                                                   >  1:360683‑M1/146‑149 (MQ=255)     aaccttgcatccggcgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttgtagGCCgg                                                                                                                                                  <  1:1146683‑M1/5‑1 (MQ=255)         ctgcatccggcgattaattccgacaaaggcggtgtaactgcgccgcttgagactgctgacaaacgaaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttgtagGcc                                                                                                                                                    >  2:432602‑M1/141‑143 (MQ=255)          tgcatccggcgattaattcctacaaaggcggcttaactgcgccgcttgagactgctgacaagcgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttgtagGCCg                                                                                                                                                   >  2:899487‑M1/140‑143 (MQ=255)          tgaatccggcgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttgtagGCCg                                                                                                                                                   >  2:866978‑M1/140‑143 (MQ=255)           ttttATGGATGAACTGCTAACGCTGATGGCAGCATACCGCGTATGCTCAGGCAAACCTAAGGTTTACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGGTTATGCCGGATgcgg                                                                                                                                            >  1:631236/1‑149 (MQ=255)           ttttATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATgcgg                                                                                                                                            >  1:1290054/1‑149 (MQ=255)           ttttATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATgcgg                                                                                                                                            <  1:283110/149‑1 (MQ=255)           ttttAGGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATgcgg                                                                                                                                            <  1:821066/149‑1 (MQ=255)            tttATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATgcggc                                                                                                                                           <  1:1199575/149‑1 (MQ=255)            tttATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATgcggc                                                                                                                                           <  1:2806/149‑1 (MQ=255)             atccggcgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttggagGCCGGAt                                                                                                                                                <  2:897418‑M1/7‑1 (MQ=255)                  gATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAAc                                                                                                                                     >  1:211246/1‑149 (MQ=255)                  gATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGAAAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAAc                                                                                                                                     >  1:865112/1‑149 (MQ=255)                   aTGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTCCGCTTTGTTTATGCCGGATgcggcg                                                                                                                                          <  2:383892/143‑1 (MQ=255)                         tGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACg                                                                                                                                    >  2:1069213/1‑143 (MQ=255)                          ttcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaatatattgaatttgcacagttttgtagGCCGGATGCGGCGTGAACGCCTTATc                                                                                                                             >  1:1215968‑M1/124‑149 (MQ=255)                           cTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTGCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGcc                                                                                                                                  <  2:879981/143‑1 (MQ=255)                           cTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATGCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGcc                                                                                                                                  <  2:880228/143‑1 (MQ=255)                              aCGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTa                                                                                                                               <  2:1129911/143‑1 (MQ=255)                                   gATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATTCGGCGTGAAAGCCTTATcccg                                                                                                                          >  2:450547/1‑141 (MQ=255)                                   gATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa                                                                                                                    >  1:765695/1‑149 (MQ=255)                                          gcaCACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaa                                                                                                                   >  2:59677/1‑143 (MQ=255)                                          gcaCACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACtgt                                                                                                             <  1:349969/149‑1 (MQ=255)                                            acacCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaaa                                                                                                                 <  2:34365/143‑1 (MQ=255)                                                 gcgTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTGGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACtgtg                                                                                                            <  2:54328/143‑1 (MQ=255)                                                 gcgTGTGGTCACGCATTCCTAAGACTCACAAAATCCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACtgtg                                                                                                            <  2:37891/143‑1 (MQ=255)                                                    tgtgGTCACGCATTCCTAAGATTGACAACATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATACTCGCTCCAAAACTGTGCCAATTCac                                                                                                   >  1:114496/1‑148 (MQ=38)                                                    tggggTCACGGATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCaa                                                                                                         <  2:580741/140‑1 (MQ=255)                                                        gTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTc                                                                                                     >  2:415043/1‑143 (MQ=255)                                                         tCACGCATTCCTAAGATTGACTAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAatatat                                                                                              >  1:921845/1‑149 (MQ=255)                                                         tCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGCTTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAACTGTGCAAATTACatatat                                                                                              >  1:1149856/1‑149 (MQ=255)                                                         tCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAatatat                                                                                              >  1:1203455/1‑149 (MQ=255)                                                         tCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAatatat                                                                                              >  1:238953/1‑149 (MQ=255)                                                           aCGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTg                                                                                            >  1:530089/1‑149 (MQ=255)                                                            cGCATTCCTAAGAGTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGc                                                                                           <  1:333164/149‑1 (MQ=255)                                                              cATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAatata                                                                                               <  2:357298/143‑1 (MQ=255)                                                              cATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAatata                                                                                               <  2:267931/143‑1 (MQ=255)                                                                  ccTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGCTTTGCATAGTGCGCTTTGTTTGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATAGATTGc                                                                                           >  2:682669/1‑143 (MQ=255)                                                                    tAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAg                                                                                         >  2:144373/1‑143 (MQ=255)                                                                    tAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAaca                                                                                   >  1:480467/1‑149 (MQ=255)                                                                    tAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGAGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAg                                                                                         >  2:701845/1‑143 (MQ=255)                                                                     aaGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAacac                                                                                  <  1:414089/149‑1 (MQ=255)                                                                     aaGATTGACAAAATTCCTGCCTGATGGGAGGCGACGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGTCTTATCCGGCCTTCAAAACTGTGCAAATTCAATATATTGCAgg                                                                                        >  2:777011/1‑143 (MQ=255)                                                                     aaGATTGACAAAATTCCTGCCTGATCGGGGGCGGCGCAATTGCGCCGACTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAacac                                                                                  >  1:729688/1‑149 (MQ=255)                                                                     aaGACTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAACTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAacac                                                                                  <  1:435828/149‑1 (MQ=255)                                                                       gATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGaa                                                                                      <  2:344612/143‑1 (MQ=255)                                                                         ttGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAg                                                                              <  1:860214/149‑1 (MQ=255)                                                                                aaTTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAgg                                                                             >  2:396892/1‑143 (MQ=255)                                                                                  ttCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATCGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACTTAGGCCTGATaa                                                                     <  1:936856/149‑1 (MQ=255)                                                                                    cctgcctgATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATGGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTg                                                                         >  2:821879/1‑143 (MQ=255)                                                                                      tgcctgATGGGAGGCGGCGTAATTGCGACGCCTCAACTGATGTACTTAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGAt                                                                       <  2:540921/143‑1 (MQ=25)                                                                                       gcctgATGGGAGGCGGCGCAATGGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATaagcgaa                                                                <  1:269376/149‑1 (MQ=255)                                                                                        cctgATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATaagcgaag                                                               <  1:1158472/149‑1 (MQ=255)                                                                                          tgATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGAAAATTCAAAAGATTGCAGGAAACACGTAGGCCTGATaagc                                                                   >  2:118404/1‑143 (MQ=255)                                                                                           gATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATaagcg                                                                  >  2:86973/1‑143 (MQ=255)                                                                                           gATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATaagcg                                                                  >  2:355186/1‑143 (MQ=255)                                                                                           gATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAgcgc                                                            >  1:899966/1‑149 (MQ=255)                                                                                           gATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAgcgc                                                            >  1:1026363/1‑149 (MQ=255)                                                                                               ggAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCa                                                        >  1:670287/1‑149 (MQ=255)                                                                                                 cggcggcGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAgg                                                      <  1:1031076/148‑1 (MQ=255)                                                                                                 aGGCGGCGCAAGTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAgg                                                      <  1:52326/149‑1 (MQ=255)                                                                                                  ggcggcGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGc                                                     >  1:109004/1‑149 (MQ=255)                                                                                                   ggggcgCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCAt                                                          <  2:281997/141‑1 (MQ=255)                                                                                                   gcggcgCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCGGGTAAGCGAAGCGCAt                                                          >  2:589477/1‑143 (MQ=255)                                                                                                    cggcgCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATCTATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCGTCAGGCAg                                                   >  1:237675/1‑149 (MQ=255)                                                                                                      gcgcAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACCAAACTGTGCCAATTCAATATATTGCCGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAg                                                       >  2:891975/1‑143 (MQ=255)                                                                                                      gcgcAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGCATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGtt                                                 <  1:750824/149‑1 (MQ=255)                                                                                                           aTTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAACTCAATATATTGCAGGAAACACGTAGGCCTGATAACCGAACAGCATCAGGCAGTTTTGCg                                            >  1:213374/1‑149 (MQ=255)                                                                                                              gcggcgGCTCAAAGCATTTACGTAGTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGtttt                                               <  2:780228/143‑1 (MQ=18)                                                                                                              gcgcCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGttt                                         <  1:70239/149‑1 (MQ=255)                                                                                                                gccgccTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATACAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGt                                       <  1:845578/149‑1 (MQ=255)                                                                                                                  ttcctgcaatatattgaatttgcacagttttgtagGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTCTGCGt                                           <  2:424806‑M1/108‑1 (MQ=255)                                                                                                                      tCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGCACCTGCAACTCCTCATAAGAGCAGCGCATGAGCCAGCTTTGCGTTTGGcagcag                                 >  1:942174/1‑149 (MQ=17)                                                                                                                                tACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACCCGTAGGCCTGCTAAGCGAGGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAgcgg                       >  1:507907/1‑149 (MQ=255)                                                                                                                                tACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGtctc                             <  2:574315/143‑1 (MQ=255)                                                                                                                                      gTGCGCTTTGTTTATGCCGGATGTGGTGTGAACGCCTTAGCCAGCCTACAAAACTGTGCAAATTCAATATTTTGCAGGTAATACGTAGGCCTTAGAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAgcgg                       <  2:98775/143‑1 (MQ=18)                                                                                                                                      gTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAgcgg                       >  2:376547/1‑143 (MQ=255)                                                                                                                                       tGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAATCGAAGCGCATGAGGCAGGTTTGCGTGTGGCAGCAGACTCAAGCGGCGCAGtt                >  1:1242017/1‑149 (MQ=21)                                                                                                                                            tttGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCCGTTCcgcc           >  1:643215/1‑149 (MQ=255)                                                                                                                                            tttGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAACAGTCTCAAGCGGCGCAGTTAcgcc           <  1:779364/149‑1 (MQ=255)                                                                                                                                            gttgtttgtGGCGGAGGGGGCGTGAAGCCCTTCTCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATGAGCGAAGCGCATCAGGCAGTTTTTCGTTTGTCAGCAGTCTCAAGCGGCGCAGt                 <  2:614962/142‑1 (MQ=21)                                                                                                                                               ttgtagGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTAc              <  2:1053456‑M1/137‑1 (MQ=255)                                                                                                                                               gTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACgccgcc        >  1:55068/1‑149 (MQ=255)                                                                                                                                                tttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCt       >  1:870265/1‑149 (MQ=255)                                                                                                                                                tttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCt       >  1:530492/1‑149 (MQ=255)                                                                                                                                                   aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTg    <  1:320994/149‑1 (MQ=255)                                                                                                                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTTTTTTTTTTTTCAGTCTCAGGCGGCgcaattaggcggc         <  2:1072762‑M1/142‑7 (MQ=255)                                                                                                                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGt   <  1:964385/149‑1 (MQ=255)                                                                                                                                                     GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTa  >  1:305399‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTA  >  CP009273/1810294‑1810590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.